Wall clock time and date at job start Mon Mar 30 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47438 * 270.00209 * 3 2 1 5 5 H 1.48502 * 109.47127 * 30.00224 * 3 2 1 6 6 H 1.48500 * 109.47017 * 149.99798 * 3 2 1 7 7 C 1.37873 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34709 * 117.00180 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.47717 * 120.00323 * 179.97438 * 12 11 10 15 15 C 1.39648 * 120.14876 * 0.02562 * 14 12 11 16 16 C 1.37929 * 119.84941 * 179.97438 * 15 14 12 17 17 C 1.38386 * 120.14825 * 0.27872 * 16 15 14 18 18 C 1.38345 * 120.30474 * 359.44560 * 17 16 15 19 19 C 1.50703 * 119.93018 * 180.29987 * 18 17 16 20 20 F 1.39902 * 109.47118 * 120.24960 * 19 18 17 21 21 F 1.39895 * 109.47360 * 240.25166 * 19 18 17 22 22 C 1.37975 * 120.14878 * 0.55131 * 18 17 16 23 23 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47375 * 59.99633 * 9 7 2 25 25 H 1.09003 * 109.46791 * 299.99906 * 9 7 2 26 26 H 1.09000 * 109.47301 * 59.99808 * 10 9 7 27 27 H 1.08997 * 109.46896 * 299.99159 * 10 9 7 28 28 H 1.07999 * 120.07600 * 359.97438 * 15 14 12 29 29 H 1.08002 * 119.92294 * 179.97438 * 16 15 14 30 30 H 1.08000 * 119.84887 * 179.71713 * 17 16 15 31 31 H 1.08998 * 109.46549 * 0.25170 * 19 18 17 32 32 H 1.07997 * 120.07576 * 179.75004 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9196 -0.0020 12 6 2.2528 -6.0494 -0.0024 13 8 3.4658 -5.9858 -0.0027 14 6 1.5822 -7.3655 -0.0023 15 6 0.1878 -7.4423 -0.0024 16 6 -0.4319 -8.6745 -0.0029 17 6 0.3249 -9.8331 0.0025 18 6 1.7066 -9.7644 -0.0031 19 6 2.5224 -11.0315 -0.0040 20 9 3.3290 -11.0660 -1.1465 21 9 3.3297 -11.0672 1.1380 22 6 2.3395 -8.5384 -0.0027 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5563 -0.8918 25 1 0.6240 -2.5575 0.8880 26 1 2.8712 -3.6047 0.8890 27 1 2.8724 -3.6040 -0.8910 28 1 -0.4039 -6.5388 -0.0021 29 1 -1.5102 -8.7352 -0.0026 30 1 -0.1655 -10.7954 0.0067 31 1 1.8550 -11.8932 -0.0042 32 1 3.4182 -8.4862 -0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170924373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:19 Heat of formation + Delta-G solvation = -175.583225 kcal Electronic energy + Delta-G solvation = -19299.036852 eV Core-core repulsion = 15666.935467 eV Total energy + Delta-G solvation = -3632.101385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.25860 -47.24472 -40.35735 -38.91431 -36.13715 -33.41411 -32.59251 -31.54743 -30.23002 -26.52632 -25.51047 -24.10085 -22.17136 -21.22103 -20.56993 -18.25248 -17.63932 -17.47633 -17.01039 -16.39218 -16.10145 -15.98665 -15.79140 -14.84478 -14.54574 -14.23896 -14.19297 -13.61547 -13.56763 -13.25013 -12.91364 -12.78196 -12.38291 -12.31766 -11.77621 -11.28531 -11.26153 -11.07613 -10.79315 -10.73524 -10.34975 -9.71230 -9.67433 -9.44631 -9.35657 -9.33423 -8.46850 -6.13076 -4.17452 0.44640 0.85482 2.54766 2.97288 3.27407 3.33509 3.37070 3.39657 3.49142 3.80301 4.21472 4.36945 4.55492 4.61932 4.72331 4.87139 4.95067 5.13449 5.23784 5.40612 5.53630 5.86580 5.97893 6.03202 6.05185 6.06290 6.41415 6.59060 6.86822 7.51513 7.58161 7.83115 8.09476 8.21211 8.87938 9.47192 10.98457 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.003176 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.830680 B = 8813.508028 C = 9300.240989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.500 3.500 13 O -0.510 6.510 14 C -0.118 4.118 15 C -0.039 4.039 16 C -0.134 4.134 17 C -0.058 4.058 18 C -0.188 4.188 19 C 0.317 3.683 20 F -0.198 7.198 21 F -0.198 7.198 22 C -0.020 4.020 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -22.901 0.000 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.344 3.656 13 O -0.401 6.401 14 C -0.119 4.119 15 C -0.057 4.057 16 C -0.152 4.152 17 C -0.076 4.076 18 C -0.189 4.189 19 C 0.263 3.737 20 F -0.180 7.180 21 F -0.180 7.180 22 C -0.038 4.038 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.168 0.832 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.420 -22.701 0.006 22.745 hybrid contribution 0.695 1.036 -0.010 1.248 sum -0.725 -21.665 -0.005 21.677 Atomic orbital electron populations 1.69969 1.06098 1.27028 1.49759 1.24978 0.94928 0.99408 0.94811 0.86460 0.79779 0.82749 0.78268 1.20457 1.21038 1.19691 1.20976 0.93220 0.90070 1.52256 0.92211 1.19179 0.94178 0.88958 0.98913 1.23718 0.96474 0.78313 1.01184 1.86557 1.41958 1.15602 1.82594 1.20996 0.85690 0.85507 0.73430 1.90813 1.14999 1.88310 1.45930 1.19280 0.94047 0.90907 1.07631 1.21809 0.93398 0.99371 0.91150 1.21189 1.00765 0.91581 1.01676 1.21173 0.92018 0.99585 0.94801 1.20251 0.94942 0.94313 1.09422 1.20348 0.84384 0.97460 0.71490 1.93035 1.76156 1.97609 1.51163 1.93033 1.76123 1.97605 1.51206 1.21083 1.01155 0.90042 0.91531 0.92688 0.95294 0.95287 0.92097 0.92097 0.83247 0.84219 0.84682 0.86219 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.68 5.41 37.16 0.20 1.88 16 11 O -0.35 -6.97 9.47 -40.51 -0.38 -7.35 16 12 C 0.50 9.09 7.90 34.60 0.27 9.37 16 13 O -0.51 -10.49 16.14 -19.24 -0.31 -10.80 16 14 C -0.12 -1.67 5.87 -104.99 -0.62 -2.28 16 15 C -0.04 -0.45 9.62 -39.17 -0.38 -0.83 16 16 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 17 C -0.06 -0.43 9.66 -39.49 -0.38 -0.81 16 18 C -0.19 -1.84 5.37 -104.68 -0.56 -2.40 16 19 C 0.32 2.63 5.45 36.01 0.20 2.83 16 20 F -0.20 -2.09 17.25 2.25 0.04 -2.05 16 21 F -0.20 -2.09 17.25 2.25 0.04 -2.05 16 22 C -0.02 -0.25 9.14 -39.17 -0.36 -0.61 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.15 1.69 7.61 -52.49 -0.40 1.29 16 29 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.14 0.50 7.94 -52.49 -0.42 0.09 16 31 H 0.12 0.48 7.87 -51.93 -0.41 0.07 16 32 H 0.14 1.93 7.65 -52.49 -0.40 1.53 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -32.19 300.37 -6.24 -38.43 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -3.28 Total: -4.26 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.58 Total: -7.33 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.69 Total: -18.15 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.19 -6.24 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170924373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.154 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds