Wall clock time and date at job start Mon Mar 30 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47438 * 270.00209 * 3 2 1 5 5 H 1.48502 * 109.47127 * 30.00224 * 3 2 1 6 6 H 1.48500 * 109.47017 * 149.99798 * 3 2 1 7 7 C 1.37873 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34709 * 117.00180 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.47717 * 120.00323 * 179.97438 * 12 11 10 15 15 C 1.39648 * 120.14876 * 0.02562 * 14 12 11 16 16 C 1.37929 * 119.84941 * 179.97438 * 15 14 12 17 17 C 1.38386 * 120.14825 * 0.27872 * 16 15 14 18 18 C 1.38345 * 120.30474 * 359.44560 * 17 16 15 19 19 C 1.50703 * 119.93018 * 180.29987 * 18 17 16 20 20 F 1.39902 * 109.47118 * 120.24960 * 19 18 17 21 21 F 1.39895 * 109.47360 * 240.25166 * 19 18 17 22 22 C 1.37975 * 120.14878 * 0.55131 * 18 17 16 23 23 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47375 * 59.99633 * 9 7 2 25 25 H 1.09003 * 109.46791 * 299.99906 * 9 7 2 26 26 H 1.09000 * 109.47301 * 59.99808 * 10 9 7 27 27 H 1.08997 * 109.46896 * 299.99159 * 10 9 7 28 28 H 1.07999 * 120.07600 * 359.97438 * 15 14 12 29 29 H 1.08002 * 119.92294 * 179.97438 * 16 15 14 30 30 H 1.08000 * 119.84887 * 179.71713 * 17 16 15 31 31 H 1.08998 * 109.46549 * 0.25170 * 19 18 17 32 32 H 1.07997 * 120.07576 * 179.75004 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9196 -0.0020 12 6 2.2528 -6.0494 -0.0024 13 8 3.4658 -5.9858 -0.0027 14 6 1.5822 -7.3655 -0.0023 15 6 0.1878 -7.4423 -0.0024 16 6 -0.4319 -8.6745 -0.0029 17 6 0.3249 -9.8331 0.0025 18 6 1.7066 -9.7644 -0.0031 19 6 2.5224 -11.0315 -0.0040 20 9 3.3290 -11.0660 -1.1465 21 9 3.3297 -11.0672 1.1380 22 6 2.3395 -8.5384 -0.0027 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5563 -0.8918 25 1 0.6240 -2.5575 0.8880 26 1 2.8712 -3.6047 0.8890 27 1 2.8724 -3.6040 -0.8910 28 1 -0.4039 -6.5388 -0.0021 29 1 -1.5102 -8.7352 -0.0026 30 1 -0.1655 -10.7954 0.0067 31 1 1.8550 -11.8932 -0.0042 32 1 3.4182 -8.4862 -0.0030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170924373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:19 Heat of formation + Delta-G solvation = -193.776197 kcal Electronic energy + Delta-G solvation = -19299.825759 eV Core-core repulsion = 15666.935467 eV Total energy + Delta-G solvation = -3632.890291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.96405 -47.97383 -41.69781 -39.95824 -37.75254 -35.49087 -33.52390 -32.50630 -32.09968 -27.57997 -26.98099 -25.47411 -23.04400 -22.96233 -21.94821 -19.42061 -18.63707 -18.33976 -18.18799 -17.90606 -17.61760 -17.17667 -16.97431 -16.46916 -15.74531 -15.25805 -15.05019 -14.91615 -14.58126 -14.38968 -14.35575 -13.94543 -13.80534 -13.18011 -13.12199 -13.03554 -12.67651 -12.63276 -12.54718 -11.99367 -11.92666 -11.58079 -11.56063 -11.41106 -10.63321 -10.29301 -10.18904 -8.29215 -6.42439 -0.48879 0.02778 1.35101 1.39503 1.41914 1.51339 1.59422 2.38407 2.53751 2.72648 3.05293 3.25344 3.46404 3.61981 3.81339 4.06325 4.08516 4.08989 4.16004 4.19577 4.34839 4.54679 4.64276 4.74312 5.05497 5.16937 5.18377 5.25228 5.42942 5.44383 5.66882 5.70134 6.03757 6.56814 6.70595 7.27319 8.83398 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.003176 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.830680 B = 8813.508028 C = 9300.240989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.355 6.355 12 C 0.497 3.503 13 O -0.544 6.544 14 C -0.148 4.148 15 C -0.048 4.048 16 C -0.123 4.123 17 C -0.030 4.030 18 C -0.192 4.192 19 C 0.311 3.689 20 F -0.215 7.215 21 F -0.215 7.215 22 C -0.038 4.038 23 H 0.269 0.731 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.144 0.856 29 H 0.179 0.821 30 H 0.192 0.808 31 H 0.180 0.820 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -24.933 -0.006 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.017 3.983 11 O -0.271 6.271 12 C 0.344 3.656 13 O -0.436 6.436 14 C -0.149 4.149 15 C -0.066 4.066 16 C -0.140 4.140 17 C -0.047 4.047 18 C -0.193 4.193 19 C 0.258 3.742 20 F -0.196 7.196 21 F -0.196 7.196 22 C -0.056 4.056 23 H 0.078 0.922 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.161 0.839 29 H 0.196 0.804 30 H 0.209 0.791 31 H 0.197 0.803 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.654 -24.754 -0.002 24.896 hybrid contribution 0.995 1.519 -0.008 1.816 sum -1.659 -23.235 -0.010 23.294 Atomic orbital electron populations 1.70081 1.07734 1.28344 1.50223 1.25940 0.95870 1.03329 0.93981 0.85322 0.78514 0.77764 0.78700 1.19508 1.20225 1.18885 1.21363 0.93681 0.91265 1.52757 0.91849 1.18976 0.94244 0.90273 0.96934 1.23247 0.95286 0.78759 1.01039 1.86540 1.41902 1.15505 1.83135 1.21830 0.85567 0.86182 0.72032 1.90777 1.16397 1.88658 1.47807 1.19109 0.95338 0.88677 1.11759 1.21909 0.92006 1.01106 0.91583 1.21645 1.02707 0.90200 0.99466 1.21791 0.90659 1.01675 0.90599 1.20579 0.96484 0.93539 1.08650 1.21001 0.84323 0.98622 0.70214 1.93003 1.76839 1.97686 1.52120 1.93001 1.76806 1.97681 1.52159 1.21050 1.00294 0.91245 0.93043 0.92245 0.97216 0.97215 0.92225 0.92200 0.83863 0.80367 0.79126 0.80306 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.78 5.35 29.85 0.16 1.94 16 10 C 0.09 4.18 5.41 71.98 0.39 4.57 16 11 O -0.35 -14.85 9.47 -56.18 -0.53 -15.39 16 12 C 0.50 19.19 7.90 70.33 0.56 19.75 16 13 O -0.54 -23.86 16.14 19.93 0.32 -23.54 16 14 C -0.15 -4.32 5.87 -20.10 -0.12 -4.43 16 15 C -0.05 -1.06 9.62 22.54 0.22 -0.84 16 16 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 17 C -0.03 -0.29 9.66 22.33 0.22 -0.07 16 18 C -0.19 -3.24 5.37 -19.90 -0.11 -3.34 16 19 C 0.31 4.23 5.45 71.24 0.39 4.62 16 20 F -0.22 -4.21 17.25 44.97 0.78 -3.43 16 21 F -0.22 -4.20 17.25 44.97 0.78 -3.43 16 22 C -0.04 -0.98 9.14 22.54 0.21 -0.78 16 23 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.14 3.26 7.61 -2.91 -0.02 3.24 16 29 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 30 H 0.19 -0.15 7.94 -2.91 -0.02 -0.18 16 31 H 0.18 0.36 7.87 -2.39 -0.02 0.34 16 32 H 0.12 3.53 7.65 -2.91 -0.02 3.51 16 Total: -1.00 -74.05 300.37 7.62 -66.43 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: 1.14 Total: -1.15 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 2.82 Total: -10.44 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.28 Total: -54.89 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.21 Total: -38.92 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 1.55 Total: -6.86 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.05 7.62 -66.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170924373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.348 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds