Wall clock time and date at job start Mon Mar 30 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46938 * 2 1 4 4 C 1.50697 * 109.46934 * 239.99732 * 2 1 3 5 5 H 1.07999 * 119.99973 * 239.99473 * 4 2 1 6 6 C 1.37877 * 120.00041 * 60.00313 * 4 2 1 7 7 N 1.31515 * 120.00171 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00260 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47515 * 119.99836 * 8 6 4 11 11 H 1.48506 * 109.47177 * 240.00184 * 8 6 4 12 12 N 1.46499 * 109.47161 * 119.99681 * 2 1 3 13 13 C 1.46504 * 119.99647 * 60.00083 * 12 2 1 14 14 C 1.34767 * 120.00078 * 239.99898 * 12 2 1 15 15 O 1.21695 * 120.00171 * 7.64893 * 14 12 2 16 16 C 1.46669 * 119.99844 * 187.64370 * 14 12 2 17 17 C 1.37887 * 126.22583 * 353.40591 * 16 14 12 18 18 C 1.39893 * 107.09688 * 180.02562 * 17 16 14 19 19 Cl 1.73602 * 126.07258 * 180.02562 * 18 17 16 20 20 C 1.35512 * 107.85208 * 359.77216 * 18 17 16 21 21 N 1.35631 * 108.85189 * 0.37134 * 20 18 17 22 22 C 1.46502 * 125.67679 * 179.88954 * 21 20 18 23 23 H 1.08991 * 109.47017 * 299.99968 * 1 2 3 24 24 H 1.08997 * 109.46989 * 60.00370 * 1 2 3 25 25 H 1.08999 * 109.46938 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00395 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47151 * 246.51505 * 13 12 2 28 28 H 1.08997 * 109.47444 * 6.51589 * 13 12 2 29 29 H 1.09005 * 109.46755 * 126.51675 * 13 12 2 30 30 H 1.08002 * 126.45254 * 0.05344 * 17 16 14 31 31 H 1.07997 * 125.58004 * 180.22316 * 20 18 17 32 32 H 1.09001 * 109.47027 * 264.53653 * 22 21 20 33 33 H 1.09008 * 109.46922 * 144.53883 * 22 21 20 34 34 H 1.08989 * 109.46959 * 24.54514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1483 -2.2858 -3.6038 10 1 1.1678 -1.5867 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 2.9732 1.1623 1.9661 16 6 3.4194 -0.7664 3.1900 17 6 3.2037 -2.0879 3.5193 18 6 3.9999 -2.3691 4.6347 19 17 4.1068 -3.8949 5.4558 20 6 4.6771 -1.2404 4.9568 21 7 4.3290 -0.2577 4.0892 22 6 4.8407 1.1150 4.1029 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7088 1.1612 -3.4844 27 1 1.0218 -2.1655 2.3055 28 1 1.1365 -2.4833 0.5579 29 1 2.5718 -2.6742 1.5933 30 1 2.5446 -2.7764 3.0114 31 1 5.3774 -1.1390 5.7726 32 1 4.1488 1.7552 4.6501 33 1 4.9382 1.4766 3.0792 34 1 5.8158 1.1343 4.5894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171551280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:22 Heat of formation + Delta-G solvation = 28.056525 kcal Electronic energy + Delta-G solvation = -18773.095329 eV Core-core repulsion = 15733.913857 eV Total energy + Delta-G solvation = -3039.181471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.35188 -38.59297 -36.35234 -35.49906 -33.32394 -32.30657 -30.19663 -28.26443 -26.96115 -25.92766 -25.24050 -22.77041 -20.79170 -20.01815 -18.85684 -16.85523 -16.39615 -15.84542 -15.55252 -15.18178 -14.41627 -14.22844 -13.93426 -13.76302 -13.08639 -12.95054 -12.78402 -12.52716 -12.38431 -12.16036 -11.63614 -11.37098 -11.12658 -10.99276 -10.87048 -10.72372 -10.51877 -10.25894 -10.21741 -9.25628 -9.13549 -8.55334 -8.46856 -8.15174 -7.63496 -6.10889 -4.19193 1.69172 2.19691 2.58557 2.99204 3.24528 3.32806 3.36257 3.83413 3.99931 4.37747 4.83261 4.90516 5.07939 5.20770 5.29036 5.35353 5.63449 5.78131 5.81364 5.93566 6.03140 6.34030 6.57152 6.74332 6.81483 6.89567 7.03273 7.13679 7.38554 7.47655 7.68050 7.97906 8.14044 8.43927 8.76532 8.94910 9.47577 10.94419 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.005102 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.291798 B = 5486.253959 C = 5963.753323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.574 5.574 13 C 0.068 3.932 14 C 0.573 3.427 15 O -0.560 6.560 16 C -0.015 4.015 17 C -0.161 4.161 18 C -0.124 4.124 19 Cl -0.060 7.060 20 C 0.017 3.983 21 N -0.407 5.407 22 C 0.073 3.927 23 H 0.012 0.988 24 H 0.094 0.906 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -5.387 13.849 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.303 5.303 13 C -0.075 4.075 14 C 0.361 3.639 15 O -0.441 6.441 16 C -0.130 4.130 17 C -0.186 4.186 18 C -0.157 4.157 19 Cl -0.031 7.031 20 C -0.119 4.119 21 N -0.080 5.080 22 C -0.068 4.068 23 H 0.032 0.968 24 H 0.113 0.887 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.194 0.806 31 H 0.190 0.810 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.370 -4.381 13.648 15.307 hybrid contribution 0.385 -0.697 -0.667 1.039 sum 5.755 -5.078 12.980 15.080 Atomic orbital electron populations 1.22099 0.97898 0.99581 1.00951 1.19038 0.91142 0.94460 0.79340 0.91800 1.21370 1.31937 1.13152 0.90128 0.92021 1.24890 0.94882 0.94965 0.98985 1.69890 1.36279 1.22599 1.23737 0.86425 0.78634 0.79612 0.82652 1.19735 1.20871 1.20929 1.47958 1.47748 1.11787 1.22799 1.22248 1.00139 0.83231 1.01864 1.16894 0.79740 0.86255 0.81041 1.90740 1.63627 1.14187 1.75544 1.20501 1.00946 0.93791 0.97715 1.22378 1.03576 0.94863 0.97757 1.19954 1.07047 0.87959 1.00754 1.98299 1.97890 1.28805 1.78153 1.21590 1.04570 0.87356 0.98406 1.43793 1.31825 1.10249 1.22086 1.22245 0.99300 0.79040 1.06185 0.96848 0.88720 0.94987 0.92683 0.93057 0.89577 0.91468 0.80611 0.81035 0.90287 0.87877 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.96 37.16 0.33 -3.14 16 2 C 0.26 6.55 2.57 -69.08 -0.18 6.38 16 3 H 0.06 1.86 6.92 -51.93 -0.36 1.50 16 4 C -0.53 -14.00 8.04 -34.44 -0.28 -14.28 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.57 -12.32 2.75 -176.81 -0.49 -12.81 16 13 C 0.07 1.16 7.60 59.85 0.45 1.62 16 14 C 0.57 12.18 7.62 -12.86 -0.10 12.09 16 15 O -0.56 -13.36 14.24 5.19 0.07 -13.29 16 16 C -0.02 -0.26 6.82 -81.98 -0.56 -0.82 16 17 C -0.16 -2.45 8.84 -39.09 -0.35 -2.80 16 18 C -0.12 -1.70 6.66 -39.94 -0.27 -1.96 16 19 Cl -0.06 -0.72 29.30 -51.86 -1.52 -2.24 16 20 C 0.02 0.21 11.35 -16.85 -0.19 0.02 16 21 N -0.41 -5.96 3.16 -120.19 -0.38 -6.34 16 22 C 0.07 0.88 10.37 59.85 0.62 1.50 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 25 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.05 0.76 7.33 -51.93 -0.38 0.37 16 28 H 0.09 1.51 6.82 -51.93 -0.35 1.16 16 29 H 0.07 1.04 5.51 -51.93 -0.29 0.75 16 30 H 0.18 2.45 4.11 -52.49 -0.22 2.23 16 31 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.50 6.79 -51.92 -0.35 1.14 16 34 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -30.44 294.95 -6.73 -37.17 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.86 Total: 1.13 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.60 Total: 0.26 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.24 Total: -43.22 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.52 Total: -2.24 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.44 -6.73 -37.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.227 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds