Wall clock time and date at job start Mon Mar 30 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46938 * 2 1 4 4 C 1.50697 * 109.46934 * 239.99732 * 2 1 3 5 5 H 1.07999 * 119.99973 * 239.99473 * 4 2 1 6 6 C 1.37877 * 120.00041 * 60.00313 * 4 2 1 7 7 N 1.31515 * 120.00171 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00260 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47515 * 119.99836 * 8 6 4 11 11 H 1.48506 * 109.47177 * 240.00184 * 8 6 4 12 12 N 1.46499 * 109.47161 * 119.99681 * 2 1 3 13 13 C 1.46504 * 119.99647 * 60.00083 * 12 2 1 14 14 C 1.34767 * 120.00078 * 239.99898 * 12 2 1 15 15 O 1.21695 * 120.00171 * 7.64893 * 14 12 2 16 16 C 1.46669 * 119.99844 * 187.64370 * 14 12 2 17 17 C 1.37887 * 126.22583 * 353.40591 * 16 14 12 18 18 C 1.39893 * 107.09688 * 180.02562 * 17 16 14 19 19 Cl 1.73602 * 126.07258 * 180.02562 * 18 17 16 20 20 C 1.35512 * 107.85208 * 359.77216 * 18 17 16 21 21 N 1.35631 * 108.85189 * 0.37134 * 20 18 17 22 22 C 1.46502 * 125.67679 * 179.88954 * 21 20 18 23 23 H 1.08991 * 109.47017 * 299.99968 * 1 2 3 24 24 H 1.08997 * 109.46989 * 60.00370 * 1 2 3 25 25 H 1.08999 * 109.46938 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00395 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47151 * 246.51505 * 13 12 2 28 28 H 1.08997 * 109.47444 * 6.51589 * 13 12 2 29 29 H 1.09005 * 109.46755 * 126.51675 * 13 12 2 30 30 H 1.08002 * 126.45254 * 0.05344 * 17 16 14 31 31 H 1.07997 * 125.58004 * 180.22316 * 20 18 17 32 32 H 1.09001 * 109.47027 * 264.53653 * 22 21 20 33 33 H 1.09008 * 109.46922 * 144.53883 * 22 21 20 34 34 H 1.08989 * 109.46959 * 24.54514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1483 -2.2858 -3.6038 10 1 1.1678 -1.5867 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 2.9732 1.1623 1.9661 16 6 3.4194 -0.7664 3.1900 17 6 3.2037 -2.0879 3.5193 18 6 3.9999 -2.3691 4.6347 19 17 4.1068 -3.8949 5.4558 20 6 4.6771 -1.2404 4.9568 21 7 4.3290 -0.2577 4.0892 22 6 4.8407 1.1150 4.1029 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7088 1.1612 -3.4844 27 1 1.0218 -2.1655 2.3055 28 1 1.1365 -2.4833 0.5579 29 1 2.5718 -2.6742 1.5933 30 1 2.5446 -2.7764 3.0114 31 1 5.3774 -1.1390 5.7726 32 1 4.1488 1.7552 4.6501 33 1 4.9382 1.4766 3.0792 34 1 5.8158 1.1343 4.5894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171551280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:22 Heat of formation + Delta-G solvation = 9.882907 kcal Electronic energy + Delta-G solvation = -18773.883396 eV Core-core repulsion = 15733.913857 eV Total energy + Delta-G solvation = -3039.969539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.52907 -40.18614 -37.40836 -37.15710 -35.08092 -33.60070 -31.87874 -29.68290 -28.30530 -27.30168 -27.09561 -24.33028 -22.07854 -21.48508 -20.24048 -18.50674 -18.02061 -17.48158 -16.88884 -16.74759 -16.00304 -15.67475 -15.15005 -14.97889 -14.66435 -14.23578 -14.19427 -13.87130 -13.77183 -13.53270 -13.22842 -12.98553 -12.76965 -12.70156 -12.36393 -12.21329 -12.15921 -12.08275 -11.69671 -11.19617 -10.81077 -10.52122 -9.68482 -9.48623 -9.13646 -8.15304 -6.31897 0.43672 1.17731 1.41956 1.43674 1.50096 1.55185 1.81436 2.32182 2.41632 2.59317 3.12998 3.62391 3.94241 4.05383 4.25843 4.36892 4.40660 4.61420 4.65011 4.73372 4.73824 4.86669 4.89797 5.01928 5.08125 5.41537 5.45991 5.61127 5.65364 5.75074 6.01694 6.12110 6.14145 6.72956 6.75703 7.23742 7.42292 8.89434 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.005102 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.291798 B = 5486.253959 C = 5963.753323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.265 3.735 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.584 5.584 13 C 0.068 3.932 14 C 0.565 3.435 15 O -0.602 6.602 16 C -0.058 4.058 17 C -0.146 4.146 18 C -0.141 4.141 19 Cl -0.042 7.042 20 C 0.047 3.953 21 N -0.411 5.411 22 C 0.071 3.929 23 H 0.018 0.982 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.265 0.735 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.186 0.814 31 H 0.216 0.784 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 -7.536 15.416 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.030 0.970 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.313 5.313 13 C -0.074 4.074 14 C 0.355 3.645 15 O -0.487 6.487 16 C -0.171 4.171 17 C -0.172 4.172 18 C -0.174 4.174 19 Cl -0.014 7.014 20 C -0.090 4.090 21 N -0.084 5.084 22 C -0.069 4.069 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.203 0.797 31 H 0.232 0.768 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.516 -6.562 15.229 17.817 hybrid contribution 0.076 -0.045 -1.027 1.031 sum 6.593 -6.607 14.202 16.995 Atomic orbital electron populations 1.21894 0.96927 1.00319 0.99982 1.18625 0.91817 0.92231 0.80943 0.96981 1.21589 1.32003 1.13155 0.90921 0.92001 1.25715 0.94998 0.95606 1.01944 1.70025 1.37205 1.23855 1.24449 0.85394 0.78233 0.78478 0.78832 1.18949 1.19923 1.21142 1.47899 1.48128 1.13367 1.21886 1.22474 1.01432 0.80829 1.02655 1.17443 0.79262 0.86037 0.81769 1.90701 1.65003 1.16144 1.76854 1.19959 1.03867 0.94650 0.98655 1.22518 1.03021 0.93899 0.97800 1.20039 1.07326 0.89250 1.00778 1.98309 1.97837 1.27622 1.77617 1.22311 1.03157 0.85987 0.97590 1.44026 1.31208 1.11343 1.21785 1.22354 1.01649 0.78103 1.04769 0.96266 0.91148 0.93217 0.92570 0.90471 0.90195 0.89622 0.79712 0.76782 0.89944 0.91120 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.96 71.98 0.65 -5.81 16 2 C 0.27 13.92 2.57 44.25 0.11 14.03 16 3 H 0.01 0.76 6.92 -2.39 -0.02 0.74 16 4 C -0.54 -29.16 8.04 25.60 0.21 -28.95 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.25 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.44 11.32 21.45 0.24 -52.20 16 8 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 12 N -0.58 -25.61 2.75 -831.52 -2.29 -27.90 16 13 C 0.07 2.24 7.60 127.77 0.97 3.21 16 14 C 0.56 24.75 7.62 86.45 0.66 25.40 16 15 O -0.60 -30.50 14.24 -4.33 -0.06 -30.56 16 16 C -0.06 -1.98 6.82 40.35 0.28 -1.71 16 17 C -0.15 -4.17 8.84 22.59 0.20 -3.97 16 18 C -0.14 -3.41 6.66 22.04 0.15 -3.26 16 19 Cl -0.04 -0.87 29.30 -2.72 -0.08 -0.95 16 20 C 0.05 1.00 11.35 83.48 0.95 1.95 16 21 N -0.41 -11.28 3.16 -534.17 -1.69 -12.97 16 22 C 0.07 1.64 10.37 127.77 1.32 2.97 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 25 H 0.05 2.18 7.21 -2.39 -0.02 2.16 16 26 H 0.27 14.32 8.31 -92.71 -0.77 13.54 16 27 H 0.08 2.13 7.33 -2.38 -0.02 2.12 16 28 H 0.08 2.73 6.82 -2.39 -0.02 2.71 16 29 H 0.09 2.50 5.51 -2.38 -0.01 2.49 16 30 H 0.19 4.70 4.11 -2.91 -0.01 4.69 16 31 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.12 6.79 -2.38 -0.02 2.11 16 34 H 0.13 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -68.82 294.95 5.21 -63.61 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.12 Total: 10.93 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.94 Total: 5.25 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.74 Total: -93.07 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.06 Total: -30.56 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -68.82 5.21 -63.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.491 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds