Wall clock time and date at job start Mon Mar 30 2020 01:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35631 * 125.67616 * 2 1 4 4 C 1.35518 * 108.84805 * 179.83208 * 3 2 1 5 5 Cl 1.73599 * 126.07180 * 180.13160 * 4 3 2 6 6 C 1.39883 * 107.84997 * 0.43118 * 4 3 2 7 7 C 1.37634 * 125.67214 * 180.31487 * 2 1 3 8 8 C 1.46664 * 126.22616 * 359.95575 * 7 2 1 9 9 O 1.21700 * 120.00178 * 5.05278 * 8 7 2 10 10 N 1.34778 * 120.00319 * 185.05514 * 8 7 2 11 11 C 1.46503 * 120.00276 * 185.10337 * 10 8 7 12 12 C 1.53005 * 109.46896 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46976 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99962 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99918 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46938 * 90.00058 * 18 16 14 20 20 H 1.48497 * 109.47250 * 210.00252 * 18 16 14 21 21 H 1.48502 * 109.47056 * 330.00108 * 18 16 14 22 22 H 1.09003 * 109.46538 * 264.16116 * 1 2 3 23 23 H 1.08990 * 109.47415 * 144.15888 * 1 2 3 24 24 H 1.08999 * 109.47067 * 24.15084 * 1 2 3 25 25 H 1.07992 * 125.57345 * 359.96508 * 3 2 1 26 26 H 1.08003 * 126.44936 * 179.69929 * 6 4 3 27 27 H 0.97000 * 119.99785 * 5.09485 * 10 8 7 28 28 H 1.09000 * 109.46768 * 299.99187 * 11 10 8 29 29 H 1.08993 * 109.46864 * 59.99481 * 11 10 8 30 30 H 1.08992 * 109.47032 * 299.99626 * 12 11 10 31 31 H 1.09002 * 109.47017 * 59.99998 * 12 11 10 32 32 H 1.09005 * 109.47088 * 300.00045 * 13 12 11 33 33 H 1.09002 * 109.47166 * 60.00338 * 13 12 11 34 34 H 0.96995 * 119.99724 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2561 1.1018 0.0000 4 6 3.5532 0.7094 0.0038 5 17 4.9378 1.7566 0.0085 6 6 3.5782 -0.6891 -0.0038 7 6 2.2677 -1.1181 -0.0061 8 6 1.8120 -2.5121 -0.0129 9 8 0.6250 -2.7639 -0.1062 10 7 2.7077 -3.5144 0.0843 11 6 2.2656 -4.9061 -0.0346 12 6 3.4703 -5.8381 0.1111 13 6 3.0085 -7.2915 -0.0124 14 6 4.1948 -8.2095 0.1317 15 1 5.1797 -7.7975 0.2947 16 6 4.0230 -9.5754 0.0545 17 7 2.8239 -10.0770 -0.1455 18 14 5.4937 -10.7133 0.2325 19 1 5.6756 -11.0669 1.6632 20 1 5.2618 -11.9492 -0.5573 21 1 6.7129 -10.0282 -0.2670 22 1 -0.3632 -0.1046 1.0224 23 1 -0.3634 -0.8330 -0.6017 24 1 -0.3633 0.9377 -0.4205 25 1 1.9089 2.1244 -0.0005 26 1 4.4583 -1.3152 -0.0078 27 1 3.6452 -3.3144 0.2329 28 1 1.5398 -5.1249 0.7486 29 1 1.8046 -5.0587 -1.0104 30 1 4.1958 -5.6192 -0.6722 31 1 3.9317 -5.6855 1.0868 32 1 2.2830 -7.5101 0.7712 33 1 2.5468 -7.4443 -0.9880 34 1 2.7030 -11.0378 -0.1995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:14 Heat of formation + Delta-G solvation = -12.430852 kcal Electronic energy + Delta-G solvation = -17448.933308 eV Core-core repulsion = 14407.996173 eV Total energy + Delta-G solvation = -3040.937136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68369 -39.04435 -36.61522 -35.51060 -33.57331 -32.84760 -31.36378 -29.55251 -26.74597 -26.67191 -23.69988 -22.14864 -20.84589 -20.69246 -19.54082 -18.05003 -16.42796 -16.04912 -15.99711 -15.42374 -15.06382 -14.50992 -14.36181 -14.03869 -13.76442 -13.58903 -13.19615 -13.08271 -12.51016 -12.28932 -11.86211 -11.81459 -11.63470 -11.08760 -10.91419 -10.76000 -10.60892 -10.07044 -9.89376 -9.44697 -9.14121 -8.98724 -8.90036 -8.44636 -8.38259 -6.02997 -4.06057 1.22052 1.88207 2.20399 2.59516 3.28076 3.30717 3.37087 3.39561 3.44732 4.43687 4.51313 4.60437 4.69674 4.95226 5.00912 5.27687 5.33025 5.40848 5.61951 5.70499 5.73090 6.11101 6.18057 6.38734 6.50060 6.56159 6.74154 6.79499 6.96650 7.59249 7.61832 7.73835 7.95573 8.21823 8.36904 9.00613 9.58329 11.08329 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.003117 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.689741 B = 8981.084669 C = 9962.768759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.404 5.404 3 C 0.028 3.972 4 C -0.122 4.122 5 Cl -0.051 7.051 6 C -0.131 4.131 7 C -0.030 4.030 8 C 0.583 3.417 9 O -0.550 6.550 10 N -0.710 5.710 11 C 0.119 3.881 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.177 0.823 26 H 0.155 0.845 27 H 0.402 0.598 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 24.257 0.395 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.076 5.076 3 C -0.109 4.109 4 C -0.155 4.155 5 Cl -0.023 7.023 6 C -0.157 4.157 7 C -0.144 4.144 8 C 0.369 3.631 9 O -0.430 6.430 10 N -0.360 5.360 11 C -0.004 4.004 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.099 0.901 23 H 0.124 0.876 24 H 0.104 0.896 25 H 0.194 0.806 26 H 0.172 0.828 27 H 0.236 0.764 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.451 23.924 0.287 24.051 hybrid contribution 1.357 -0.418 0.175 1.430 sum -1.094 23.507 0.462 23.537 Atomic orbital electron populations 1.22346 0.75056 1.05171 1.04721 1.43803 1.07199 1.04539 1.52068 1.21696 0.88965 0.92147 1.08128 1.19886 0.87971 0.91359 1.16293 1.98326 1.40718 1.65564 1.97696 1.21251 0.95415 0.93240 1.05825 1.20189 0.89568 0.88285 1.16393 1.16899 0.85888 0.83173 0.77091 1.90792 1.16080 1.84792 1.51298 1.45907 1.11044 1.06789 1.72268 1.21722 0.98952 0.77646 1.02039 1.21911 0.95403 0.97630 1.01044 1.19027 0.96890 0.87809 0.97615 1.21204 0.94126 0.91179 1.49594 0.92584 1.25029 0.95782 0.98413 0.95234 1.69961 1.21334 1.12399 1.49620 0.86577 0.82930 0.80311 0.78079 1.20650 1.21220 1.19846 0.90142 0.87564 0.89594 0.80568 0.82762 0.76353 0.91405 0.91511 0.92534 0.92549 0.96253 0.96243 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 10.49 59.85 0.63 1.19 16 2 N -0.40 -4.26 3.16 -120.19 -0.38 -4.64 16 3 C 0.03 0.25 11.35 -16.84 -0.19 0.06 16 4 C -0.12 -1.27 6.66 -39.94 -0.27 -1.53 16 5 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 6 C -0.13 -1.45 10.34 -39.09 -0.40 -1.86 16 7 C -0.03 -0.38 6.88 -81.99 -0.56 -0.94 16 8 C 0.58 8.69 7.77 -12.86 -0.10 8.59 16 9 O -0.55 -9.67 14.78 5.19 0.08 -9.60 16 10 N -0.71 -10.11 5.53 -61.62 -0.34 -10.45 16 11 C 0.12 2.02 5.68 -4.04 -0.02 2.00 16 12 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.11 1.09 6.54 -51.93 -0.34 0.75 16 24 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 26 H 0.15 1.45 7.49 -52.48 -0.39 1.05 16 27 H 0.40 4.71 7.42 -40.82 -0.30 4.41 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -32.13 311.56 -7.74 -39.87 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.38 Total: -0.54 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.61 Total: -7.76 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.02 Total: -41.01 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.13 -7.74 -39.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.439 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds