Wall clock time and date at job start Mon Mar 30 2020 01:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35631 * 125.67616 * 2 1 4 4 C 1.35518 * 108.84805 * 179.83208 * 3 2 1 5 5 Cl 1.73599 * 126.07180 * 180.13160 * 4 3 2 6 6 C 1.39883 * 107.84997 * 0.43118 * 4 3 2 7 7 C 1.37634 * 125.67214 * 180.31487 * 2 1 3 8 8 C 1.46664 * 126.22616 * 359.95575 * 7 2 1 9 9 O 1.21700 * 120.00178 * 5.05278 * 8 7 2 10 10 N 1.34778 * 120.00319 * 185.05514 * 8 7 2 11 11 C 1.46503 * 120.00276 * 185.10337 * 10 8 7 12 12 C 1.53005 * 109.46896 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46736 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.46976 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99962 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99891 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99918 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46938 * 90.00058 * 18 16 14 20 20 H 1.48497 * 109.47250 * 210.00252 * 18 16 14 21 21 H 1.48502 * 109.47056 * 330.00108 * 18 16 14 22 22 H 1.09003 * 109.46538 * 264.16116 * 1 2 3 23 23 H 1.08990 * 109.47415 * 144.15888 * 1 2 3 24 24 H 1.08999 * 109.47067 * 24.15084 * 1 2 3 25 25 H 1.07992 * 125.57345 * 359.96508 * 3 2 1 26 26 H 1.08003 * 126.44936 * 179.69929 * 6 4 3 27 27 H 0.97000 * 119.99785 * 5.09485 * 10 8 7 28 28 H 1.09000 * 109.46768 * 299.99187 * 11 10 8 29 29 H 1.08993 * 109.46864 * 59.99481 * 11 10 8 30 30 H 1.08992 * 109.47032 * 299.99626 * 12 11 10 31 31 H 1.09002 * 109.47017 * 59.99998 * 12 11 10 32 32 H 1.09005 * 109.47088 * 300.00045 * 13 12 11 33 33 H 1.09002 * 109.47166 * 60.00338 * 13 12 11 34 34 H 0.96995 * 119.99724 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2561 1.1018 0.0000 4 6 3.5532 0.7094 0.0038 5 17 4.9378 1.7566 0.0085 6 6 3.5782 -0.6891 -0.0038 7 6 2.2677 -1.1181 -0.0061 8 6 1.8120 -2.5121 -0.0129 9 8 0.6250 -2.7639 -0.1062 10 7 2.7077 -3.5144 0.0843 11 6 2.2656 -4.9061 -0.0346 12 6 3.4703 -5.8381 0.1111 13 6 3.0085 -7.2915 -0.0124 14 6 4.1948 -8.2095 0.1317 15 1 5.1797 -7.7975 0.2947 16 6 4.0230 -9.5754 0.0545 17 7 2.8239 -10.0770 -0.1455 18 14 5.4937 -10.7133 0.2325 19 1 5.6756 -11.0669 1.6632 20 1 5.2618 -11.9492 -0.5573 21 1 6.7129 -10.0282 -0.2670 22 1 -0.3632 -0.1046 1.0224 23 1 -0.3634 -0.8330 -0.6017 24 1 -0.3633 0.9377 -0.4205 25 1 1.9089 2.1244 -0.0005 26 1 4.4583 -1.3152 -0.0078 27 1 3.6452 -3.3144 0.2329 28 1 1.5398 -5.1249 0.7486 29 1 1.8046 -5.0587 -1.0104 30 1 4.1958 -5.6192 -0.6722 31 1 3.9317 -5.6855 1.0868 32 1 2.2830 -7.5101 0.7712 33 1 2.5468 -7.4443 -0.9880 34 1 2.7030 -11.0378 -0.1995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171594062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:14 Heat of formation + Delta-G solvation = -32.574963 kcal Electronic energy + Delta-G solvation = -17449.806823 eV Core-core repulsion = 14407.996173 eV Total energy + Delta-G solvation = -3041.810650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.51768 -40.21811 -37.37048 -36.97979 -35.28999 -33.85905 -32.97642 -30.62229 -28.38641 -27.44039 -25.32143 -23.39663 -22.34569 -21.62971 -20.63652 -19.01817 -18.46310 -17.17854 -16.99612 -16.59131 -16.38800 -16.27844 -15.30809 -15.13559 -14.90216 -14.61059 -14.26796 -13.91962 -13.79632 -13.74804 -13.51624 -13.18100 -12.74934 -12.54959 -12.40737 -12.37649 -11.86765 -11.67387 -11.57561 -11.24793 -11.02240 -10.54446 -10.22304 -9.73884 -9.27073 -8.18881 -6.30018 0.30785 1.13549 1.42179 1.42801 1.43893 1.54887 1.71029 2.21266 2.39469 2.46174 3.15163 3.64463 3.89250 4.02079 4.15967 4.21335 4.22939 4.36916 4.53629 4.55362 4.72374 4.87141 4.94405 4.98833 5.17179 5.32691 5.42246 5.53309 5.68417 5.71785 5.85208 6.03013 6.23301 6.47508 6.87535 7.09263 7.39588 8.93241 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.003117 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.689741 B = 8981.084669 C = 9962.768759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.408 5.408 3 C 0.051 3.949 4 C -0.143 4.143 5 Cl -0.045 7.045 6 C -0.123 4.123 7 C -0.064 4.064 8 C 0.582 3.418 9 O -0.584 6.584 10 N -0.702 5.702 11 C 0.134 3.866 12 C -0.103 4.103 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.260 1.260 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.214 0.786 26 H 0.167 0.833 27 H 0.416 0.584 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.068 0.932 32 H -0.007 1.007 33 H -0.006 1.006 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 26.214 0.637 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.080 5.080 3 C -0.087 4.087 4 C -0.175 4.175 5 Cl -0.017 7.017 6 C -0.149 4.149 7 C -0.177 4.177 8 C 0.371 3.629 9 O -0.467 6.467 10 N -0.353 5.353 11 C 0.010 3.990 12 C -0.141 4.141 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.184 1.184 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.142 0.858 25 H 0.231 0.769 26 H 0.184 0.816 27 H 0.253 0.747 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.852 25.901 0.535 25.920 hybrid contribution 0.844 -0.923 0.096 1.254 sum -0.008 24.978 0.631 24.985 Atomic orbital electron populations 1.22464 0.73983 1.06201 1.04816 1.44037 1.08004 1.04329 1.51619 1.22315 0.88387 0.93115 1.04891 1.20021 0.88843 0.91232 1.17425 1.98329 1.40445 1.65148 1.97732 1.21484 0.95242 0.94050 1.04173 1.19845 0.90546 0.87516 1.19787 1.17229 0.85324 0.84247 0.76085 1.90773 1.17513 1.85473 1.52931 1.45647 1.11846 1.05489 1.72351 1.21295 0.97690 0.79081 1.00939 1.21616 0.96133 0.94197 1.02168 1.18935 0.95718 0.91526 0.95168 1.21693 0.95170 0.91981 1.49064 0.91539 1.26009 0.98799 1.00409 0.94842 1.70104 1.23775 1.12840 1.50822 0.85428 0.79369 0.77862 0.78272 1.19857 1.21077 1.18418 0.89801 0.90012 0.85806 0.76930 0.81571 0.74715 0.92767 0.92675 0.91217 0.91326 0.98872 0.98801 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.49 127.77 1.34 2.32 16 2 N -0.41 -7.85 3.16 -534.18 -1.69 -9.54 16 3 C 0.05 0.77 11.35 83.48 0.95 1.72 16 4 C -0.14 -2.61 6.66 22.04 0.15 -2.46 16 5 Cl -0.04 -0.76 29.30 -2.72 -0.08 -0.84 16 6 C -0.12 -2.51 10.34 22.59 0.23 -2.28 16 7 C -0.06 -1.53 6.88 40.35 0.28 -1.25 16 8 C 0.58 17.40 7.77 86.44 0.67 18.07 16 9 O -0.58 -21.13 14.78 -4.35 -0.06 -21.19 16 10 N -0.70 -19.77 5.53 -467.08 -2.58 -22.36 16 11 C 0.13 4.63 5.68 86.38 0.49 5.12 16 12 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 15 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 18 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.68 6.54 -2.39 -0.02 1.66 16 24 H 0.12 0.85 8.12 -2.39 -0.02 0.84 16 25 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 26 H 0.17 2.80 7.49 -2.91 -0.02 2.78 16 27 H 0.42 9.23 7.42 -92.71 -0.69 8.54 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.27 311.56 3.43 -66.84 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.42 Total: 8.64 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.11 Total: -10.63 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -3.99 Total: -88.53 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -70.27 3.43 -66.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.263 kcal (2) G-P(sol) polarization free energy of solvation -70.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds