Wall clock time and date at job start Mon Mar 30 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29504 * 126.14597 * 2 1 4 4 N 1.26242 * 116.58371 * 180.02562 * 3 2 1 5 5 C 1.29892 * 117.66405 * 0.02562 * 4 3 2 6 6 N 1.39079 * 125.65786 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99724 * 0.02562 * 6 5 4 8 8 O 1.21583 * 120.00271 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99726 * 179.72728 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 9 7 6 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47596 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47595 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99443 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00313 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00263 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46973 * 90.00363 * 17 15 13 19 19 H 1.48505 * 109.47151 * 210.00008 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00542 * 17 15 13 21 21 S 1.71313 * 108.68468 * 0.25999 * 5 4 3 22 22 H 1.09000 * 109.47449 * 90.02313 * 1 2 3 23 23 H 1.08999 * 109.47584 * 210.02386 * 1 2 3 24 24 H 1.09003 * 109.47502 * 330.02129 * 1 2 3 25 25 H 0.97000 * 119.99793 * 180.02562 * 6 5 4 26 26 H 0.97000 * 119.99736 * 0.26820 * 9 7 6 27 27 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 28 28 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 29 29 H 1.09007 * 109.46479 * 299.99856 * 11 10 9 30 30 H 1.09003 * 109.47114 * 59.99068 * 11 10 9 31 31 H 1.08998 * 109.46818 * 300.00027 * 12 11 10 32 32 H 1.09002 * 109.47128 * 59.99191 * 12 11 10 33 33 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2708 1.0458 0.0000 4 7 3.5157 0.8361 -0.0005 5 6 3.9193 -0.3986 -0.0015 6 7 5.2453 -0.8181 -0.0027 7 6 6.2398 0.0915 -0.0023 8 8 5.9778 1.2788 -0.0015 9 7 7.5248 -0.3150 0.0021 10 6 8.6059 0.6736 0.0085 11 6 9.9557 -0.0466 0.0132 12 6 11.0848 0.9859 0.0193 13 6 12.4143 0.2765 0.0245 14 1 12.4503 -0.8030 0.0240 15 6 13.5846 1.0053 0.0300 16 7 13.5407 2.3198 0.0311 17 14 15.2326 0.1259 0.0357 18 1 15.6750 -0.1056 -1.3628 19 1 16.2374 0.9619 0.7407 20 1 15.0957 -1.1776 0.7338 21 16 2.5473 -1.4244 -0.0092 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5135 25 1 5.4543 -1.7653 -0.0037 26 1 7.7338 -1.2622 0.0011 27 1 8.5309 1.2998 -0.8805 28 1 8.5236 1.2962 0.8994 29 1 10.0304 -0.6725 0.9025 30 1 10.0383 -0.6696 -0.8775 31 1 11.0098 1.6114 -0.8702 32 1 11.0023 1.6092 0.9097 33 1 14.3640 2.8325 0.0346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171724931.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:42 Heat of formation + Delta-G solvation = 31.331925 kcal Electronic energy + Delta-G solvation = -17198.631925 eV Core-core repulsion = 14193.928943 eV Total energy + Delta-G solvation = -3004.702982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.48724 -40.03564 -36.06693 -35.08735 -33.43913 -32.64529 -31.20827 -28.60039 -26.80737 -25.31922 -23.37471 -21.99945 -20.74186 -20.16581 -19.51753 -17.93184 -17.43684 -16.44952 -16.35045 -15.44889 -15.09259 -14.56689 -14.45450 -14.26595 -14.07835 -13.48112 -13.44427 -12.98484 -12.32090 -11.99541 -11.87352 -11.39282 -10.92312 -10.88885 -10.77150 -10.62605 -10.50619 -9.98251 -9.91717 -9.87276 -9.49369 -9.15997 -9.10632 -8.74806 -8.39352 -6.03731 -4.07256 0.24739 0.25430 0.90984 2.26579 2.41219 3.17129 3.29305 3.35838 3.38211 3.74313 4.07640 4.42413 4.58737 4.81951 5.01900 5.23623 5.32009 5.48418 5.56216 5.72604 5.77273 6.09776 6.28229 6.40591 6.54314 6.79075 6.94466 7.60812 7.70266 7.72843 7.94531 8.33535 8.37046 8.54634 8.99323 9.57079 11.07516 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.077211 B = 0.002597 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.553487 B =10778.374530 C =11109.854480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.002 4.002 3 N -0.226 5.226 4 N -0.270 5.270 5 C 0.257 3.743 6 N -0.638 5.638 7 C 0.691 3.309 8 O -0.525 6.525 9 N -0.730 5.730 10 C 0.133 3.867 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 S 0.092 5.908 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.420 0.580 26 H 0.396 0.604 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.069 -12.324 -0.086 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.285 4.285 3 N -0.062 5.062 4 N -0.113 5.113 5 C -0.114 4.114 6 N -0.292 5.292 7 C 0.388 3.612 8 O -0.395 6.395 9 N -0.385 5.385 10 C 0.011 3.989 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 S 0.330 5.670 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.258 0.742 26 H 0.230 0.770 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.917 -10.678 -0.087 27.109 hybrid contribution 1.372 -1.433 -0.013 1.985 sum -23.545 -12.111 -0.100 26.477 Atomic orbital electron populations 1.20344 0.83680 1.04611 1.04255 1.29912 1.02873 0.88313 1.07385 1.71450 0.96267 1.25902 1.12596 1.71573 1.05647 1.14382 1.19720 1.25593 0.91255 0.92784 1.01769 1.42149 1.00461 1.10690 1.75937 1.16061 0.80785 0.85081 0.79247 1.91104 1.81730 1.13680 1.52958 1.45398 1.03522 1.11087 1.78474 1.21667 0.84472 0.90344 1.02453 1.21908 0.92733 1.00194 1.00973 1.19032 0.91058 0.93502 0.97815 1.21179 0.90907 0.92951 1.51118 0.92642 1.25034 0.99350 0.94847 0.95260 1.69961 1.27802 1.05008 1.50393 0.86575 0.83667 0.79531 0.78091 1.20653 1.21190 1.19913 1.84685 0.98322 1.11665 1.72281 0.89212 0.89776 0.88633 0.74243 0.76994 0.91436 0.91438 0.92611 0.92619 0.96159 0.96154 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 36.00 0.38 0.05 16 2 C 0.00 -0.02 7.80 -13.26 -0.10 -0.12 16 3 N -0.23 -3.24 11.65 33.58 0.39 -2.85 16 4 N -0.27 -4.46 9.73 29.97 0.29 -4.17 16 5 C 0.26 3.27 8.14 -87.05 -0.71 2.56 16 6 N -0.64 -7.17 5.41 -17.32 -0.09 -7.27 16 7 C 0.69 10.61 8.53 -86.92 -0.74 9.87 16 8 O -0.52 -10.78 15.02 5.29 0.08 -10.70 16 9 N -0.73 -9.92 5.56 -65.23 -0.36 -10.29 16 10 C 0.13 2.29 5.67 -4.04 -0.02 2.26 16 11 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 12 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 13 C -0.52 -14.43 9.11 -34.45 -0.31 -14.74 16 14 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 S 0.09 0.74 23.31 -107.50 -2.51 -1.76 16 22 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.42 2.73 8.83 -40.82 -0.36 2.37 16 26 H 0.40 3.93 8.49 -40.82 -0.35 3.58 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -36.60 306.94 -7.80 -44.40 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.05 Total: -1.77 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.89 Total: -0.56 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.96 Total: -50.54 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.60 -7.80 -44.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171724931.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.729 kcal (2) G-P(sol) polarization free energy of solvation -36.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds