Wall clock time and date at job start Mon Mar 30 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29504 * 126.14597 * 2 1 4 4 N 1.26242 * 116.58371 * 180.02562 * 3 2 1 5 5 C 1.29892 * 117.66405 * 0.02562 * 4 3 2 6 6 N 1.39079 * 125.65786 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99724 * 0.02562 * 6 5 4 8 8 O 1.21583 * 120.00271 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99726 * 179.72728 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 9 7 6 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47596 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47595 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99443 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00313 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00263 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46973 * 90.00363 * 17 15 13 19 19 H 1.48505 * 109.47151 * 210.00008 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00542 * 17 15 13 21 21 S 1.71313 * 108.68468 * 0.25999 * 5 4 3 22 22 H 1.09000 * 109.47449 * 90.02313 * 1 2 3 23 23 H 1.08999 * 109.47584 * 210.02386 * 1 2 3 24 24 H 1.09003 * 109.47502 * 330.02129 * 1 2 3 25 25 H 0.97000 * 119.99793 * 180.02562 * 6 5 4 26 26 H 0.97000 * 119.99736 * 0.26820 * 9 7 6 27 27 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 28 28 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 29 29 H 1.09007 * 109.46479 * 299.99856 * 11 10 9 30 30 H 1.09003 * 109.47114 * 59.99068 * 11 10 9 31 31 H 1.08998 * 109.46818 * 300.00027 * 12 11 10 32 32 H 1.09002 * 109.47128 * 59.99191 * 12 11 10 33 33 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2708 1.0458 0.0000 4 7 3.5157 0.8361 -0.0005 5 6 3.9193 -0.3986 -0.0015 6 7 5.2453 -0.8181 -0.0027 7 6 6.2398 0.0915 -0.0023 8 8 5.9778 1.2788 -0.0015 9 7 7.5248 -0.3150 0.0021 10 6 8.6059 0.6736 0.0085 11 6 9.9557 -0.0466 0.0132 12 6 11.0848 0.9859 0.0193 13 6 12.4143 0.2765 0.0245 14 1 12.4503 -0.8030 0.0240 15 6 13.5846 1.0053 0.0300 16 7 13.5407 2.3198 0.0311 17 14 15.2326 0.1259 0.0357 18 1 15.6750 -0.1056 -1.3628 19 1 16.2374 0.9619 0.7407 20 1 15.0957 -1.1776 0.7338 21 16 2.5473 -1.4244 -0.0092 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5135 25 1 5.4543 -1.7653 -0.0037 26 1 7.7338 -1.2622 0.0011 27 1 8.5309 1.2998 -0.8805 28 1 8.5236 1.2962 0.8994 29 1 10.0304 -0.6725 0.9025 30 1 10.0383 -0.6696 -0.8775 31 1 11.0098 1.6114 -0.8702 32 1 11.0023 1.6092 0.9097 33 1 14.3640 2.8325 0.0346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171724931.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:42 Heat of formation + Delta-G solvation = 3.328019 kcal Electronic energy + Delta-G solvation = -17199.846266 eV Core-core repulsion = 14193.928943 eV Total energy + Delta-G solvation = -3005.917322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42997 -41.17752 -37.35329 -36.36687 -35.26487 -33.54797 -32.82089 -29.57826 -28.40852 -26.30831 -24.95990 -23.18033 -22.34792 -21.05447 -20.69038 -18.89917 -18.64797 -18.19637 -17.46508 -16.62786 -16.61229 -16.21477 -15.64652 -15.49799 -15.11208 -14.30271 -14.21888 -14.08614 -13.75895 -13.58040 -13.39531 -12.77267 -12.55512 -12.43500 -12.38288 -11.95934 -11.67420 -11.54107 -11.39455 -11.20545 -10.90582 -10.55819 -10.55076 -10.34165 -9.75734 -8.19002 -6.30600 -0.55073 -0.52228 0.12416 1.28663 1.42360 1.43615 1.46955 1.54542 2.02778 2.41924 2.76764 3.14960 3.39059 3.77612 4.12565 4.21211 4.22220 4.53963 4.71389 4.76078 4.86213 4.91473 4.94131 5.15743 5.16660 5.33335 5.50334 5.55300 5.71210 5.84958 6.22223 6.70076 6.87502 7.25183 7.39144 7.67439 8.93187 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.077211 B = 0.002597 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.553487 B =10778.374530 C =11109.854480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.002 3.998 3 N -0.279 5.279 4 N -0.329 5.329 5 C 0.220 3.780 6 N -0.620 5.620 7 C 0.693 3.307 8 O -0.583 6.583 9 N -0.712 5.712 10 C 0.148 3.852 11 C -0.099 4.099 12 C 0.022 3.978 13 C -0.539 4.539 14 H 0.069 0.931 15 C -0.006 4.006 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.259 1.259 21 S 0.199 5.801 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.096 0.904 25 H 0.443 0.557 26 H 0.418 0.582 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.072 0.928 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.328 -16.020 -0.108 30.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.281 4.281 3 N -0.115 5.115 4 N -0.172 5.172 5 C -0.152 4.152 6 N -0.277 5.277 7 C 0.390 3.610 8 O -0.457 6.457 9 N -0.369 5.369 10 C 0.024 3.976 11 C -0.137 4.137 12 C -0.016 4.016 13 C -0.577 4.577 14 H 0.087 0.913 15 C -0.203 4.203 16 N -0.577 5.577 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.183 1.183 21 S 0.438 5.562 22 H 0.127 0.873 23 H 0.133 0.867 24 H 0.115 0.885 25 H 0.285 0.715 26 H 0.256 0.744 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.211 -14.478 -0.109 29.944 hybrid contribution 1.563 -0.357 -0.010 1.604 sum -24.648 -14.835 -0.119 28.768 Atomic orbital electron populations 1.20666 0.80431 1.06217 1.05921 1.30850 1.04932 0.88682 1.03591 1.71411 0.96127 1.28130 1.15857 1.71496 1.07253 1.17336 1.21149 1.25875 0.92632 0.93859 1.02818 1.41716 0.99526 1.11097 1.75343 1.16166 0.81481 0.84804 0.78519 1.91074 1.82731 1.16480 1.55408 1.44944 1.02390 1.11569 1.78015 1.21205 0.84949 0.90568 1.00912 1.21593 0.90996 0.98567 1.02551 1.18955 0.93166 0.94377 0.95118 1.21680 0.91911 0.93788 1.50292 0.91273 1.26050 1.03838 0.95565 0.94876 1.70117 1.28904 1.06881 1.51762 0.85402 0.78292 0.78642 0.78417 1.19856 1.21230 1.18260 1.84244 0.93920 1.07984 1.70043 0.87278 0.86656 0.88506 0.71493 0.74397 0.93168 0.93175 0.90913 0.90903 0.98988 0.98984 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 71.23 0.75 0.26 16 2 C 0.00 0.04 7.80 88.45 0.69 0.73 16 3 N -0.28 -8.11 11.65 -47.69 -0.56 -8.66 16 4 N -0.33 -11.18 9.73 -59.09 -0.58 -11.75 16 5 C 0.22 5.42 8.14 179.10 1.46 6.88 16 6 N -0.62 -13.28 5.41 -326.97 -1.77 -15.04 16 7 C 0.69 21.35 8.53 179.05 1.53 22.88 16 8 O -0.58 -25.05 15.02 -3.98 -0.06 -25.11 16 9 N -0.71 -18.79 5.56 -478.55 -2.66 -21.45 16 10 C 0.15 5.16 5.67 86.38 0.49 5.65 16 11 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 12 C 0.02 1.11 4.97 29.84 0.15 1.26 16 13 C -0.54 -29.69 9.11 25.60 0.23 -29.45 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 16 N -0.94 -57.42 13.29 21.44 0.28 -57.13 16 17 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 S 0.20 2.62 23.31 -56.49 -1.32 1.30 16 22 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 25 H 0.44 4.65 8.83 -92.71 -0.82 3.83 16 26 H 0.42 7.26 8.49 -92.71 -0.79 6.48 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.26 15.17 8.31 -92.72 -0.77 14.40 16 Total: -1.00 -84.61 306.94 0.84 -83.77 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -0.45 Total: 3.65 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.92 Total: 4.84 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -5.28 Total: -114.04 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.32 Total: 1.30 kcal Total: -84.61 0.84 -83.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171724931.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.101 kcal (2) G-P(sol) polarization free energy of solvation -84.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds