Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37753 * 119.90287 * 2 1 4 4 C 1.39759 * 119.89942 * 179.74486 * 3 2 1 5 5 C 1.47433 * 120.14872 * 180.25401 * 4 3 2 6 6 O 1.21507 * 119.99863 * 180.27909 * 5 4 3 7 7 O 1.34747 * 119.99732 * 0.28206 * 5 4 3 8 8 C 1.45205 * 116.99840 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47368 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47209 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00167 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00053 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99871 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47138 * 90.00416 * 14 12 10 16 16 H 1.48503 * 109.47327 * 209.99796 * 14 12 10 17 17 H 1.48502 * 109.47231 * 330.00138 * 14 12 10 18 18 C 1.40004 * 119.70024 * 0.53234 * 4 3 2 19 19 F 1.35104 * 120.09427 * 179.74560 * 18 4 3 20 20 C 1.38136 * 119.80229 * 359.47237 * 18 4 3 21 21 C 1.38545 * 120.10147 * 0.27379 * 20 18 4 22 22 F 1.35101 * 119.84869 * 180.02562 * 21 20 18 23 23 H 1.08996 * 109.46929 * 269.97828 * 1 2 3 24 24 H 1.09006 * 109.46986 * 29.97205 * 1 2 3 25 25 H 1.09000 * 109.47095 * 149.97147 * 1 2 3 26 26 H 1.08001 * 120.05021 * 0.03039 * 3 2 1 27 27 H 1.09004 * 109.46909 * 299.99728 * 8 7 5 28 28 H 1.08999 * 109.47107 * 59.99177 * 8 7 5 29 29 H 1.08995 * 109.47232 * 300.00145 * 9 8 7 30 30 H 1.09007 * 109.46876 * 59.99637 * 9 8 7 31 31 H 0.97007 * 119.99678 * 179.97438 * 13 12 10 32 32 H 1.08004 * 119.94845 * 180.24888 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1938 1.1941 0.0000 4 6 3.5914 1.1941 0.0054 5 6 4.3319 2.4689 0.0111 6 8 5.5470 2.4657 0.0106 7 8 3.6612 3.6376 0.0168 8 6 4.4552 4.8533 0.0228 9 6 3.5265 6.0690 0.0281 10 6 4.3506 7.3307 0.0349 11 1 5.4290 7.2714 0.0350 12 6 3.7279 8.5608 0.0400 13 7 2.4147 8.6331 0.0394 14 14 4.7494 10.1247 0.0478 15 1 5.0210 10.5455 -1.3503 16 1 4.0045 11.1992 0.7521 17 1 6.0348 9.8730 0.7475 18 6 4.2850 -0.0221 -0.0005 19 9 5.6360 -0.0314 -0.0006 20 6 3.5839 -1.2123 -0.0006 21 6 2.1985 -1.2027 -0.0006 22 9 1.5180 -2.3698 -0.0001 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3633 -0.8897 -0.5143 26 1 1.6530 2.1290 0.0005 27 1 5.0841 4.8721 0.9129 28 1 5.0842 4.8808 -0.8670 29 1 2.8979 6.0500 -0.8621 30 1 2.8972 6.0416 0.9178 31 1 1.9766 9.4986 0.0434 32 1 4.1166 -2.1518 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175041614.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -182.036668 kcal Electronic energy + Delta-G solvation = -19592.939748 eV Core-core repulsion = 15960.558520 eV Total energy + Delta-G solvation = -3632.381227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.22663 -50.20262 -41.60491 -39.85642 -37.73495 -35.45909 -33.75812 -32.88475 -31.92981 -27.80073 -27.28987 -25.45101 -23.96722 -22.84846 -21.81422 -19.42819 -19.23991 -18.51192 -18.25286 -17.74505 -17.53976 -17.11086 -16.54359 -16.49577 -16.46196 -15.71540 -15.51744 -15.12502 -14.64625 -14.37659 -14.28544 -14.19357 -13.58673 -13.21037 -13.12105 -12.96563 -12.71124 -12.60629 -12.58879 -12.54797 -11.95248 -11.57234 -11.52571 -11.40023 -10.60739 -10.33422 -9.81712 -8.27038 -6.39748 -0.81913 -0.20381 1.18841 1.40482 1.43255 1.49784 1.57164 2.20510 2.39907 2.56612 3.05064 3.07733 3.28784 3.48422 3.53204 3.88286 4.20203 4.20732 4.37734 4.41463 4.58775 4.64536 4.67271 4.77869 4.82377 5.06980 5.16355 5.19847 5.45120 5.46853 5.51236 5.72701 6.06457 6.54833 6.73334 7.29903 8.85357 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.003675 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.306523 B = 7616.665028 C = 8485.214861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.131 4.131 3 C -0.002 4.002 4 C -0.182 4.182 5 C 0.500 3.500 6 O -0.532 6.532 7 O -0.351 6.351 8 C 0.091 3.909 9 C 0.032 3.968 10 C -0.552 4.552 11 H 0.063 0.937 12 C 0.009 3.991 13 N -0.924 5.924 14 Si 0.971 3.029 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.265 1.265 18 C 0.171 3.829 19 F -0.122 7.122 20 C -0.187 4.187 21 C 0.168 3.832 22 F -0.116 7.116 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.167 0.833 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.268 0.732 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -21.113 -0.078 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.020 4.020 4 C -0.184 4.184 5 C 0.346 3.654 6 O -0.423 6.423 7 O -0.268 6.268 8 C 0.018 3.982 9 C -0.005 4.005 10 C -0.590 4.590 11 H 0.081 0.919 12 C -0.190 4.190 13 N -0.563 5.563 14 Si 0.795 3.205 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.189 1.189 18 C 0.151 3.849 19 F -0.101 7.101 20 C -0.206 4.206 21 C 0.148 3.852 22 F -0.094 7.094 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.185 0.815 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.134 -20.994 -0.075 21.397 hybrid contribution 0.911 0.854 -0.004 1.249 sum -3.223 -20.140 -0.079 20.396 Atomic orbital electron populations 1.20880 0.86797 1.04997 1.04508 1.20205 0.99404 0.90284 1.03340 1.21323 0.90361 0.99890 0.90462 1.19294 0.95276 0.88839 1.15012 1.21296 0.85987 0.85336 0.72774 1.90853 1.15818 1.88644 1.47027 1.86533 1.42062 1.14992 1.83185 1.23259 0.94014 0.79796 1.01164 1.18981 0.94753 0.89695 0.97046 1.21365 0.93646 0.91337 1.52626 0.91858 1.25907 0.96217 1.02835 0.94053 1.70083 1.09609 1.26338 1.50297 0.85355 0.78593 0.77904 0.78647 1.19588 1.20323 1.18908 1.17422 0.77150 0.92509 0.97780 1.91595 1.28488 1.97191 1.92785 1.21075 0.93183 0.98612 1.07756 1.17370 0.88737 0.81526 0.97569 1.91565 1.79465 1.45468 1.92892 0.89026 0.89290 0.89784 0.81549 0.92118 0.92104 0.97099 0.97100 0.92303 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.83 71.24 0.70 -0.61 16 2 C -0.13 -2.19 5.88 -19.86 -0.12 -2.30 16 3 C 0.00 -0.05 9.25 22.52 0.21 0.16 16 4 C -0.18 -5.08 5.88 -20.06 -0.12 -5.20 16 5 C 0.50 18.44 7.89 70.24 0.55 19.00 16 6 O -0.53 -22.59 15.13 19.81 0.30 -22.29 16 7 O -0.35 -13.99 9.47 -56.58 -0.54 -14.52 16 8 C 0.09 4.07 5.41 71.98 0.39 4.46 16 9 C 0.03 1.71 5.35 29.85 0.16 1.87 16 10 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 11 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 12 C 0.01 0.51 5.46 84.65 0.46 0.98 16 13 N -0.92 -54.37 13.29 21.45 0.28 -54.09 16 14 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 C 0.17 4.30 7.28 22.67 0.17 4.47 16 19 F -0.12 -3.65 15.55 44.97 0.70 -2.96 16 20 C -0.19 -3.29 9.99 22.32 0.22 -3.07 16 21 C 0.17 2.75 7.25 22.46 0.16 2.91 16 22 F -0.12 -1.74 16.46 44.97 0.74 -1.00 16 23 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.09 0.92 8.08 -2.38 -0.02 0.90 16 25 H 0.08 0.80 7.63 -2.39 -0.02 0.79 16 26 H 0.17 3.45 7.61 -2.91 -0.02 3.43 16 27 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 32 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -66.28 297.45 7.69 -58.60 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: 1.15 Total: -0.89 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 3.02 Total: -8.14 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.28 Total: -54.09 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.24 Total: -36.81 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 1.44 Total: -3.95 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -66.28 7.69 -58.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175041614.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.439 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds