Wall clock time and date at job start Mon Mar 30 2020 01:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00257 * 2 1 4 4 H 1.48494 * 109.46993 * 270.00176 * 3 2 1 5 5 H 1.48506 * 109.47002 * 29.99982 * 3 2 1 6 6 H 1.48496 * 109.47190 * 149.99925 * 3 2 1 7 7 C 1.38958 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99359 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99836 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00443 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47400 * 180.02562 * 12 10 9 14 14 C 1.39676 * 120.00261 * 180.02562 * 13 12 10 15 15 C 1.38926 * 120.07182 * 359.97438 * 14 13 12 16 16 C 1.38089 * 119.92422 * 179.97438 * 15 14 13 17 17 C 1.38301 * 120.07155 * 0.28052 * 16 15 14 18 18 C 1.38266 * 120.15343 * 359.44513 * 17 16 15 19 19 C 1.50699 * 119.96646 * 180.27620 * 18 17 16 20 20 F 1.39892 * 109.46969 * 120.27616 * 19 18 17 21 21 F 1.39904 * 109.47260 * 240.27732 * 19 18 17 22 22 C 1.38134 * 120.07086 * 0.55323 * 18 17 16 23 23 H 0.97002 * 120.00073 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00271 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47322 * 59.99634 * 12 10 9 26 26 H 1.09000 * 109.47116 * 300.00019 * 12 10 9 27 27 H 0.97003 * 119.99498 * 359.97438 * 13 12 10 28 28 H 1.07999 * 120.03920 * 0.02562 * 15 14 13 29 29 H 1.08002 * 119.96096 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.92197 * 179.69817 * 17 16 15 31 31 H 1.08996 * 109.47010 * 0.27495 * 19 18 17 32 32 H 1.07998 * 120.03610 * 179.74416 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0089 -1.2035 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 6 1.7299 -7.2934 0.0017 15 6 0.3644 -7.5489 0.0018 16 6 -0.0926 -8.8520 0.0013 17 6 0.8075 -9.9021 0.0066 18 6 2.1672 -9.6513 0.0007 19 6 3.1442 -10.7987 0.0002 20 9 3.9485 -10.7257 -1.1421 21 9 3.9488 -10.7266 1.1425 22 6 2.6311 -8.3502 0.0012 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3907 0.0005 25 1 0.6165 -4.9209 -0.8885 26 1 0.6173 -4.9205 0.8914 27 1 3.1492 -5.7993 0.0012 28 1 -0.3390 -6.7294 0.0014 29 1 -1.1541 -9.0514 0.0018 30 1 0.4474 -10.9203 0.0111 31 1 2.5973 -11.7415 -0.0001 32 1 3.6933 -8.1550 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175126188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:43 Heat of formation + Delta-G solvation = -116.094555 kcal Electronic energy + Delta-G solvation = -19326.669038 eV Core-core repulsion = 15729.440027 eV Total energy + Delta-G solvation = -3597.229011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.05081 -47.04128 -39.56222 -38.33741 -35.31213 -34.03229 -31.71223 -31.45622 -30.09266 -26.78491 -26.13701 -24.40749 -22.44802 -21.15741 -19.46295 -18.17057 -17.89312 -17.39947 -17.26840 -16.31719 -16.09133 -15.44727 -14.97457 -14.87419 -14.41209 -14.08349 -13.98803 -13.66553 -13.47536 -13.42051 -13.14961 -12.91386 -12.31311 -12.11881 -11.87845 -11.67518 -11.42677 -11.16910 -10.85222 -10.49098 -10.35281 -10.10248 -9.67520 -9.05727 -8.68272 -8.15218 -7.32865 -6.56399 -3.98250 1.17561 1.55843 3.08691 3.19437 3.24464 3.46758 3.67035 3.70007 3.74752 4.06407 4.09026 4.51368 4.78861 4.93744 4.96707 5.11350 5.11572 5.24720 5.49053 5.57486 5.65369 5.81270 5.88828 6.03296 6.25986 6.35218 6.46082 6.73742 7.40448 7.42016 7.87148 7.98034 8.40438 9.00426 9.33763 9.82067 10.60537 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039984 B = 0.003220 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.107046 B = 8692.322123 C = 9212.635574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.594 6.594 12 C 0.112 3.888 13 N -0.722 5.722 14 C 0.228 3.772 15 C -0.185 4.185 16 C -0.071 4.071 17 C -0.160 4.160 18 C -0.123 4.123 19 C 0.313 3.687 20 F -0.201 7.201 21 F -0.201 7.201 22 C -0.162 4.162 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.413 0.587 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -18.368 0.012 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.480 6.480 12 C -0.017 4.017 13 N -0.351 5.351 14 C 0.122 3.878 15 C -0.208 4.208 16 C -0.090 4.090 17 C -0.181 4.181 18 C -0.124 4.124 19 C 0.259 3.741 20 F -0.183 7.183 21 F -0.183 7.183 22 C -0.185 4.185 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.251 0.749 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.770 -17.976 0.019 18.063 hybrid contribution 0.192 1.030 -0.013 1.048 sum -1.578 -16.946 0.006 17.020 Atomic orbital electron populations 1.69606 1.06016 1.28564 1.49409 1.25319 0.95677 0.99940 0.96715 0.85807 0.79267 0.80417 0.78540 1.20226 1.20754 1.19284 1.19737 0.93493 0.82009 1.48249 0.87700 1.41788 1.09381 1.04485 1.62793 1.19711 0.88349 0.84929 0.85682 1.90515 1.13774 1.86729 1.57007 1.20975 0.92148 0.86511 1.02022 1.44573 1.09928 1.00971 1.79647 1.17789 0.92736 0.84641 0.92679 1.20852 0.93601 0.97695 1.08668 1.20819 0.99300 0.91777 0.97105 1.20547 0.91385 0.99271 1.06884 1.19958 0.94388 0.93580 1.04498 1.20443 0.83228 0.99136 0.71258 1.93009 1.76179 1.97718 1.51351 1.93013 1.76168 1.97723 1.51362 1.20335 0.99405 0.90854 1.07914 0.91573 0.77129 0.90510 0.90514 0.74852 0.85463 0.85627 0.86050 0.86630 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.49 13.05 55.50 0.72 -22.77 16 2 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 3 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 10 C 0.43 9.67 7.85 -10.99 -0.09 9.58 16 11 O -0.59 -15.46 15.24 5.54 0.08 -15.38 16 12 C 0.11 1.89 5.39 -5.19 -0.03 1.86 16 13 N -0.72 -11.89 5.70 -59.81 -0.34 -12.23 16 14 C 0.23 3.33 6.65 -83.79 -0.56 2.77 16 15 C -0.19 -2.34 9.31 -39.38 -0.37 -2.71 16 16 C -0.07 -0.75 10.04 -39.61 -0.40 -1.15 16 17 C -0.16 -1.63 9.67 -39.55 -0.38 -2.02 16 18 C -0.12 -1.46 5.37 -104.65 -0.56 -2.02 16 19 C 0.31 3.22 5.45 36.01 0.20 3.42 16 20 F -0.20 -2.46 17.25 2.25 0.04 -2.42 16 21 F -0.20 -2.46 17.26 2.25 0.04 -2.42 16 22 C -0.16 -2.26 9.44 -39.38 -0.37 -2.63 16 23 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.40 9.05 7.90 -40.82 -0.32 8.73 16 25 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 26 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 27 H 0.41 7.34 7.45 -40.82 -0.30 7.04 16 28 H 0.13 1.47 6.74 -52.49 -0.35 1.12 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.86 7.94 -52.49 -0.42 0.45 16 31 H 0.12 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -30.19 294.40 -5.88 -36.07 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -2.99 Total: 13.40 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.80 Total: -0.70 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.33 Total: -48.39 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.08 Total: -4.83 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.19 -5.88 -36.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175126188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.021 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds