Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00257 * 2 1 4 4 H 1.48494 * 109.46993 * 270.00176 * 3 2 1 5 5 H 1.48506 * 109.47002 * 29.99982 * 3 2 1 6 6 H 1.48496 * 109.47190 * 149.99925 * 3 2 1 7 7 C 1.38958 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99359 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99836 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00443 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47400 * 180.02562 * 12 10 9 14 14 C 1.39676 * 120.00261 * 180.02562 * 13 12 10 15 15 C 1.38926 * 120.07182 * 359.97438 * 14 13 12 16 16 C 1.38089 * 119.92422 * 179.97438 * 15 14 13 17 17 C 1.38301 * 120.07155 * 0.28052 * 16 15 14 18 18 C 1.38266 * 120.15343 * 359.44513 * 17 16 15 19 19 C 1.50699 * 119.96646 * 180.27620 * 18 17 16 20 20 F 1.39892 * 109.46969 * 120.27616 * 19 18 17 21 21 F 1.39904 * 109.47260 * 240.27732 * 19 18 17 22 22 C 1.38134 * 120.07086 * 0.55323 * 18 17 16 23 23 H 0.97002 * 120.00073 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00271 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47322 * 59.99634 * 12 10 9 26 26 H 1.09000 * 109.47116 * 300.00019 * 12 10 9 27 27 H 0.97003 * 119.99498 * 359.97438 * 13 12 10 28 28 H 1.07999 * 120.03920 * 0.02562 * 15 14 13 29 29 H 1.08002 * 119.96096 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.92197 * 179.69817 * 17 16 15 31 31 H 1.08996 * 109.47010 * 0.27495 * 19 18 17 32 32 H 1.07998 * 120.03610 * 179.74416 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0089 -1.2035 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 6 1.7299 -7.2934 0.0017 15 6 0.3644 -7.5489 0.0018 16 6 -0.0926 -8.8520 0.0013 17 6 0.8075 -9.9021 0.0066 18 6 2.1672 -9.6513 0.0007 19 6 3.1442 -10.7987 0.0002 20 9 3.9485 -10.7257 -1.1421 21 9 3.9488 -10.7266 1.1425 22 6 2.6311 -8.3502 0.0012 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3907 0.0005 25 1 0.6165 -4.9209 -0.8885 26 1 0.6173 -4.9205 0.8914 27 1 3.1492 -5.7993 0.0012 28 1 -0.3390 -6.7294 0.0014 29 1 -1.1541 -9.0514 0.0018 30 1 0.4474 -10.9203 0.0111 31 1 2.5973 -11.7415 -0.0001 32 1 3.6933 -8.1550 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175126188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = -136.115422 kcal Electronic energy + Delta-G solvation = -19327.537208 eV Core-core repulsion = 15729.440027 eV Total energy + Delta-G solvation = -3598.097181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.91301 -47.92431 -40.73825 -39.93917 -36.62105 -35.86784 -33.41227 -32.60030 -31.26789 -28.24970 -27.02565 -26.12958 -23.37233 -22.25234 -21.11282 -20.04703 -19.04171 -18.26619 -18.13604 -17.68452 -17.06246 -16.95783 -16.38799 -16.30589 -16.00507 -15.64023 -14.90148 -14.74369 -14.57490 -14.51185 -14.31587 -14.12502 -13.67801 -13.56082 -13.40392 -12.93864 -12.72830 -12.49216 -12.31899 -12.14783 -11.70888 -11.60647 -11.15326 -10.57750 -10.12088 -9.96850 -8.54129 -8.42390 -6.03923 0.24888 0.63800 1.34089 1.40703 1.52802 1.89430 2.17157 2.38116 2.80894 2.87945 3.13136 3.13429 3.33149 3.73939 4.03848 4.14518 4.17043 4.25500 4.39590 4.41616 4.45795 4.56786 4.75138 4.96004 5.30206 5.35234 5.46057 5.57473 5.80193 5.91151 6.31468 6.48445 6.68022 7.02084 7.42097 7.94756 8.62648 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039984 B = 0.003220 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.107046 B = 8692.322123 C = 9212.635574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.427 3.573 11 O -0.633 6.633 12 C 0.130 3.870 13 N -0.738 5.738 14 C 0.203 3.797 15 C -0.192 4.192 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.133 4.133 19 C 0.308 3.692 20 F -0.216 7.216 21 F -0.216 7.216 22 C -0.186 4.186 23 H 0.281 0.719 24 H 0.401 0.599 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.401 0.599 28 H 0.137 0.863 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -20.021 0.000 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.208 4.208 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.098 0.902 9 N -0.194 5.194 10 C 0.214 3.786 11 O -0.521 6.521 12 C 0.002 3.998 13 N -0.368 5.368 14 C 0.099 3.901 15 C -0.215 4.215 16 C -0.087 4.087 17 C -0.165 4.165 18 C -0.135 4.135 19 C 0.255 3.745 20 F -0.197 7.197 21 F -0.197 7.197 22 C -0.209 4.209 23 H 0.090 0.910 24 H 0.235 0.765 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.238 0.762 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.753 -19.670 0.005 20.025 hybrid contribution 0.765 1.398 -0.009 1.594 sum -2.987 -18.273 -0.005 18.515 Atomic orbital electron populations 1.69655 1.06803 1.29670 1.49163 1.26060 0.96562 1.02445 0.95712 0.84913 0.77902 0.76713 0.78744 1.19539 1.19318 1.19829 1.19688 0.92819 0.83837 1.50669 0.90191 1.41811 1.09567 1.04461 1.63517 1.20691 0.88184 0.86357 0.83349 1.90486 1.15891 1.87669 1.58061 1.20838 0.91593 0.83430 1.03974 1.44532 1.09059 1.01692 1.81540 1.17996 0.93890 0.83656 0.94558 1.21129 0.92685 0.99334 1.08317 1.21279 1.01240 0.90769 0.95453 1.21065 0.90274 1.01353 1.03808 1.20280 0.95903 0.93085 1.04224 1.20985 0.82702 1.00673 0.70143 1.92979 1.76720 1.97848 1.52189 1.92982 1.76709 1.97852 1.52199 1.20420 0.98795 0.92191 1.09458 0.90969 0.76464 0.88365 0.88375 0.76248 0.84551 0.82150 0.81876 0.81507 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.62 13.05 21.67 0.28 -47.34 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 3 Si 0.99 41.84 29.55 68.60 2.03 43.87 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.56 -27.68 5.29 -306.98 -1.62 -29.31 16 10 C 0.43 19.79 7.85 87.66 0.69 20.48 16 11 O -0.63 -34.38 15.24 -3.08 -0.05 -34.43 16 12 C 0.13 4.36 5.39 85.63 0.46 4.82 16 13 N -0.74 -24.85 5.70 -343.14 -1.96 -26.81 16 14 C 0.20 5.87 6.65 38.21 0.25 6.12 16 15 C -0.19 -4.44 9.31 22.40 0.21 -4.23 16 16 C -0.07 -1.19 10.04 22.25 0.22 -0.96 16 17 C -0.15 -2.35 9.67 22.29 0.22 -2.14 16 18 C -0.13 -2.90 5.37 -19.88 -0.11 -3.01 16 19 C 0.31 5.67 5.45 71.24 0.39 6.05 16 20 F -0.22 -5.06 17.25 44.97 0.78 -4.28 16 21 F -0.22 -5.06 17.26 44.97 0.78 -4.28 16 22 C -0.19 -5.21 9.44 22.40 0.21 -5.00 16 23 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 24 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 25 H 0.10 2.87 7.95 -2.39 -0.02 2.86 16 26 H 0.10 2.87 7.95 -2.39 -0.02 2.85 16 27 H 0.40 15.15 7.45 -92.71 -0.69 14.45 16 28 H 0.14 2.82 6.74 -2.91 -0.02 2.80 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.16 1.29 7.94 -2.91 -0.02 1.27 16 31 H 0.17 1.36 7.87 -2.39 -0.02 1.34 16 32 H 0.11 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -67.59 294.40 3.82 -63.77 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.24 Total: 34.65 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 3.83 Total: 4.15 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.30 Total: -103.46 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.05 Total: -34.43 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 1.55 Total: -8.56 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -67.59 3.82 -63.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175126188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.343 kcal (2) G-P(sol) polarization free energy of solvation -67.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds