Wall clock time and date at job start Mon Mar 30 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47024 * 2 1 4 4 N 1.29504 * 126.13986 * 90.02299 * 3 2 1 5 5 N 1.26250 * 116.58298 * 179.97438 * 4 3 2 6 6 C 1.29890 * 117.65743 * 359.97438 * 5 4 3 7 7 N 1.39086 * 125.65181 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00156 * 359.97239 * 7 6 5 9 9 O 1.21579 * 120.00010 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99791 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00661 * 0.02562 * 10 8 7 12 12 C 1.46508 * 119.99986 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.46997 * 89.99886 * 12 10 8 14 14 H 1.08001 * 120.00120 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99711 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00093 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99799 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47101 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46863 * 120.00308 * 17 15 13 20 20 H 1.48497 * 109.47003 * 240.00038 * 17 15 13 21 21 S 1.71305 * 108.69388 * 0.02562 * 6 5 4 22 22 H 1.09004 * 109.46750 * 60.00244 * 1 2 3 23 23 H 1.08993 * 109.46767 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47233 * 299.99934 * 1 2 3 25 25 H 1.08999 * 109.47345 * 240.00596 * 2 1 3 26 26 H 1.08997 * 109.47454 * 120.00218 * 2 1 3 27 27 H 0.97005 * 119.99658 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.46713 * 89.99454 * 11 10 8 29 29 H 1.08998 * 109.47699 * 209.99722 * 11 10 8 30 30 H 1.09005 * 109.46689 * 330.00849 * 11 10 8 31 31 H 1.08999 * 109.47280 * 209.99938 * 12 10 8 32 32 H 1.09004 * 109.46878 * 330.00528 * 12 10 8 33 33 H 0.97005 * 119.99735 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2873 2.1408 1.0458 5 7 2.7026 3.3144 0.8362 6 6 2.8376 3.6948 -0.3984 7 7 3.2806 4.9447 -0.8178 8 6 3.6121 5.8823 0.0918 9 8 3.5243 5.6354 1.2790 10 7 4.0418 7.0933 -0.3147 11 6 4.1481 7.3907 -1.7452 12 6 4.4027 8.1124 0.6741 13 6 5.8655 7.9868 1.0138 14 1 6.4664 7.2245 0.5403 15 6 6.4369 8.8459 1.9284 16 7 5.7053 9.7745 2.5046 17 14 8.2504 8.6907 2.3491 18 1 8.8457 7.5756 1.5697 19 1 8.9471 9.9577 2.0108 20 1 8.4000 8.4159 3.8007 21 16 2.3796 2.4017 -1.4244 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.3509 5.1416 -1.7651 28 1 3.2058 7.8079 -2.1005 29 1 4.9490 8.1119 -1.9080 30 1 4.3682 6.4735 -2.2916 31 1 4.2090 9.1028 0.2623 32 1 3.8068 7.9708 1.5758 33 1 6.1073 10.3786 3.1484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176543114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:42 Heat of formation + Delta-G solvation = 49.901426 kcal Electronic energy + Delta-G solvation = -18061.532225 eV Core-core repulsion = 15057.634477 eV Total energy + Delta-G solvation = -3003.897748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14602 -39.60001 -35.55888 -34.77535 -34.06855 -32.56127 -29.57291 -27.87897 -26.51690 -25.63404 -23.83217 -22.84136 -20.99760 -19.85260 -18.42516 -17.65865 -16.77053 -16.59693 -15.91849 -15.02991 -14.90937 -14.61752 -14.19603 -14.04091 -13.41199 -13.20281 -13.07889 -12.65680 -12.25274 -12.06154 -11.98577 -11.50043 -11.25118 -11.11743 -10.86233 -10.63101 -10.45603 -10.18430 -10.03613 -9.66260 -9.58757 -9.28317 -8.56925 -8.45152 -7.75646 -6.06111 -4.10984 0.57713 0.58868 1.22302 2.76948 2.78936 3.29997 3.38183 3.42050 3.79147 4.05881 4.26911 4.45426 4.72286 4.94276 4.97836 5.13621 5.28601 5.34839 5.53331 5.55220 5.71971 5.73649 5.92130 6.00903 6.22763 6.47311 7.17572 7.38866 7.49781 7.90371 8.18742 8.33489 8.81801 8.90092 9.09866 9.54321 11.01991 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.004151 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.976997 B = 6744.327437 C = 7089.640008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 C -0.007 4.007 4 N -0.221 5.221 5 N -0.271 5.271 6 C 0.270 3.730 7 N -0.640 5.640 8 C 0.688 3.312 9 O -0.517 6.517 10 N -0.607 5.607 11 C 0.080 3.920 12 C 0.260 3.740 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.282 1.282 21 S 0.074 5.926 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.415 0.585 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -15.622 -13.768 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 C -0.290 4.290 4 N -0.057 5.057 5 N -0.115 5.115 6 C -0.102 4.102 7 N -0.297 5.297 8 C 0.386 3.614 9 O -0.386 6.386 10 N -0.344 5.344 11 C -0.064 4.064 12 C 0.141 3.859 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.208 1.208 21 S 0.312 5.688 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.254 0.746 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.662 -15.324 -12.385 21.522 hybrid contribution 1.202 0.301 -0.383 1.297 sum -7.460 -15.022 -12.767 21.079 Atomic orbital electron populations 1.21796 0.93503 1.02534 1.02896 1.20075 0.96616 0.86508 1.04445 1.29831 1.07759 1.03104 0.88283 1.71423 1.10115 0.98172 1.25988 1.71613 1.18695 1.06938 1.14263 1.25694 0.99565 0.92545 0.92410 1.42636 1.67333 1.08794 1.10889 1.16012 0.79883 0.80658 0.84814 1.91067 1.56329 1.77615 1.13557 1.47552 1.66895 1.12369 1.07557 1.21659 1.02030 1.00800 0.81892 1.19337 0.96066 0.83839 0.86681 1.21469 0.94460 1.16272 1.24605 0.92379 1.24926 0.98473 0.95091 0.95541 1.69939 1.35913 1.18984 1.28406 0.86420 0.84648 0.77733 0.78481 1.19853 1.20947 1.20776 1.84524 1.64679 1.07271 1.12334 0.92369 0.91312 0.91752 0.89504 0.88313 0.74590 0.93309 0.89801 0.93351 0.94396 0.93464 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.68 16 2 C -0.03 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C -0.01 -0.08 7.05 -13.26 -0.09 -0.18 16 4 N -0.22 -3.90 11.65 33.58 0.39 -3.51 16 5 N -0.27 -5.57 9.73 29.97 0.29 -5.28 16 6 C 0.27 4.56 8.14 -87.05 -0.71 3.86 16 7 N -0.64 -10.63 5.27 -17.32 -0.09 -10.73 16 8 C 0.69 15.13 8.24 -86.93 -0.72 14.42 16 9 O -0.52 -14.12 14.60 5.30 0.08 -14.04 16 10 N -0.61 -12.83 2.86 -188.74 -0.54 -13.37 16 11 C 0.08 1.18 10.20 59.85 0.61 1.79 16 12 C 0.26 6.78 5.16 -5.19 -0.03 6.75 16 13 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 S 0.07 0.84 23.31 -107.50 -2.51 -1.67 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.42 4.98 6.55 -40.82 -0.27 4.72 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 31 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -36.81 303.12 -7.17 -43.97 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.90 Total: -2.91 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.17 Total: 11.78 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.79 Total: -58.79 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.81 -7.17 -43.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176543114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.874 kcal (2) G-P(sol) polarization free energy of solvation -36.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds