Wall clock time and date at job start Mon Mar 30 2020 00:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47024 * 2 1 4 4 N 1.29504 * 126.13986 * 90.02299 * 3 2 1 5 5 N 1.26250 * 116.58298 * 179.97438 * 4 3 2 6 6 C 1.29890 * 117.65743 * 359.97438 * 5 4 3 7 7 N 1.39086 * 125.65181 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00156 * 359.97239 * 7 6 5 9 9 O 1.21579 * 120.00010 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99791 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00661 * 0.02562 * 10 8 7 12 12 C 1.46508 * 119.99986 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.46997 * 89.99886 * 12 10 8 14 14 H 1.08001 * 120.00120 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99711 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00093 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99799 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47101 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46863 * 120.00308 * 17 15 13 20 20 H 1.48497 * 109.47003 * 240.00038 * 17 15 13 21 21 S 1.71305 * 108.69388 * 0.02562 * 6 5 4 22 22 H 1.09004 * 109.46750 * 60.00244 * 1 2 3 23 23 H 1.08993 * 109.46767 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47233 * 299.99934 * 1 2 3 25 25 H 1.08999 * 109.47345 * 240.00596 * 2 1 3 26 26 H 1.08997 * 109.47454 * 120.00218 * 2 1 3 27 27 H 0.97005 * 119.99658 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.46713 * 89.99454 * 11 10 8 29 29 H 1.08998 * 109.47699 * 209.99722 * 11 10 8 30 30 H 1.09005 * 109.46689 * 330.00849 * 11 10 8 31 31 H 1.08999 * 109.47280 * 209.99938 * 12 10 8 32 32 H 1.09004 * 109.46878 * 330.00528 * 12 10 8 33 33 H 0.97005 * 119.99735 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2873 2.1408 1.0458 5 7 2.7026 3.3144 0.8362 6 6 2.8376 3.6948 -0.3984 7 7 3.2806 4.9447 -0.8178 8 6 3.6121 5.8823 0.0918 9 8 3.5243 5.6354 1.2790 10 7 4.0418 7.0933 -0.3147 11 6 4.1481 7.3907 -1.7452 12 6 4.4027 8.1124 0.6741 13 6 5.8655 7.9868 1.0138 14 1 6.4664 7.2245 0.5403 15 6 6.4369 8.8459 1.9284 16 7 5.7053 9.7745 2.5046 17 14 8.2504 8.6907 2.3491 18 1 8.8457 7.5756 1.5697 19 1 8.9471 9.9577 2.0108 20 1 8.4000 8.4159 3.8007 21 16 2.3796 2.4017 -1.4244 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.3509 5.1416 -1.7651 28 1 3.2058 7.8079 -2.1005 29 1 4.9490 8.1119 -1.9080 30 1 4.3682 6.4735 -2.2916 31 1 4.2090 9.1028 0.2623 32 1 3.8068 7.9708 1.5758 33 1 6.1073 10.3786 3.1484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176543114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:41 Heat of formation + Delta-G solvation = 22.734150 kcal Electronic energy + Delta-G solvation = -18062.710286 eV Core-core repulsion = 15057.634477 eV Total energy + Delta-G solvation = -3005.075809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.41408 -41.15281 -37.04449 -36.41836 -35.07364 -34.56590 -30.82722 -29.67431 -27.76678 -27.03326 -25.32076 -24.16357 -22.37268 -21.08671 -19.82374 -18.98263 -18.71266 -18.11561 -17.28094 -16.86746 -16.27579 -15.95323 -15.64846 -14.97102 -14.77224 -14.56859 -14.38534 -13.99057 -13.59980 -13.52955 -13.19268 -12.86456 -12.68830 -12.57468 -12.39265 -12.24137 -12.12056 -11.71921 -11.63491 -11.32383 -10.79185 -10.66080 -10.57021 -9.95587 -9.44268 -8.24287 -6.38703 -0.52607 -0.50639 0.13610 1.34606 1.37991 1.43251 1.50669 1.52929 2.17050 2.37333 2.73045 3.05894 3.28165 3.74772 4.08378 4.22967 4.33341 4.41786 4.61602 4.76073 4.81157 4.92628 4.95233 5.03185 5.12323 5.16945 5.37233 5.47390 5.60750 5.82194 6.02388 6.69442 6.78031 7.26580 7.43596 7.72291 8.82985 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.004151 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.976997 B = 6744.327437 C = 7089.640008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C 0.003 3.997 4 N -0.274 5.274 5 N -0.332 5.332 6 C 0.224 3.776 7 N -0.623 5.623 8 C 0.687 3.313 9 O -0.584 6.584 10 N -0.612 5.612 11 C 0.072 3.928 12 C 0.275 3.725 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.269 1.269 19 H -0.265 1.265 20 H -0.284 1.284 21 S 0.196 5.804 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.041 0.959 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.437 0.563 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.038 0.962 32 H -0.002 1.002 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 -17.738 -16.886 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.281 4.281 4 N -0.109 5.109 5 N -0.176 5.176 6 C -0.147 4.147 7 N -0.281 5.281 8 C 0.385 3.615 9 O -0.458 6.458 10 N -0.348 5.348 11 C -0.070 4.070 12 C 0.154 3.846 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.190 1.190 20 H -0.210 1.210 21 S 0.436 5.564 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.060 0.940 25 H 0.141 0.859 26 H 0.121 0.879 27 H 0.280 0.720 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.445 -17.469 -15.611 24.904 hybrid contribution 0.999 0.769 0.465 1.344 sum -7.446 -16.700 -15.146 23.743 Atomic orbital electron populations 1.21804 0.92417 1.04142 1.02142 1.20447 0.97354 0.83780 1.06449 1.30864 1.04031 1.04517 0.88641 1.71394 1.13108 0.98187 1.28182 1.71548 1.19871 1.08763 1.17428 1.25955 1.01132 0.93786 0.93867 1.42022 1.67099 1.08116 1.10895 1.16166 0.79348 0.81297 0.84659 1.91016 1.58970 1.79080 1.16716 1.47394 1.66574 1.11401 1.09459 1.22027 1.03696 1.03024 0.78210 1.18778 0.94292 0.85143 0.86378 1.21732 0.95507 1.16087 1.24978 0.92970 1.25833 1.03219 0.94700 0.95299 1.70049 1.37919 1.19727 1.28930 0.85367 0.79121 0.78475 0.77809 1.19351 1.18980 1.21020 1.83999 1.61792 1.02427 1.08217 0.91708 0.88563 0.93958 0.85852 0.87934 0.71963 0.90275 0.90150 0.89390 0.94419 0.98396 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 71.98 0.71 -0.92 16 2 C -0.04 -0.50 6.56 29.85 0.20 -0.31 16 3 C 0.00 0.06 7.05 88.45 0.62 0.69 16 4 N -0.27 -9.80 11.65 -47.68 -0.56 -10.36 16 5 N -0.33 -14.14 9.73 -59.09 -0.58 -14.72 16 6 C 0.22 7.49 8.14 179.10 1.46 8.95 16 7 N -0.62 -20.33 5.27 -326.98 -1.72 -22.05 16 8 C 0.69 31.15 8.24 179.06 1.48 32.63 16 9 O -0.58 -33.96 14.60 -3.96 -0.06 -34.02 16 10 N -0.61 -26.33 2.86 -869.30 -2.48 -28.81 16 11 C 0.07 1.98 10.20 127.77 1.30 3.28 16 12 C 0.28 15.04 5.16 85.63 0.44 15.48 16 13 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 17 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 21 S 0.20 3.84 23.31 -56.49 -1.32 2.52 16 22 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.44 9.43 6.55 -92.70 -0.61 8.82 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.09 1.69 6.36 -2.38 -0.02 1.68 16 31 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 33 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -87.62 303.12 3.04 -84.57 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 0.53 Total: 2.27 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 6.91 Total: 29.11 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -5.05 Total: -132.38 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.06 Total: -34.02 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.32 Total: 2.52 kcal Total: -87.62 3.04 -84.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176543114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.307 kcal (2) G-P(sol) polarization free energy of solvation -87.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds