Wall clock time and date at job start Mon Mar 30 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46870 * 299.99560 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99605 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.50693 * 109.47486 * 179.72204 * 14 12 11 16 16 C 1.38257 * 119.96320 * 269.72376 * 15 14 12 17 17 C 1.38221 * 120.07250 * 179.76648 * 16 15 14 18 18 C 1.38411 * 119.99216 * 0.50897 * 17 16 15 19 19 F 1.35104 * 120.03046 * 179.72262 * 18 17 16 20 20 C 1.38644 * 119.93397 * 359.74290 * 18 17 16 21 21 F 1.35105 * 120.03562 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96760 * 89.99761 * 15 14 12 23 23 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 25 25 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 26 26 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 27 27 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 28 28 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 29 29 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 30 30 H 1.08002 * 119.96709 * 0.02562 * 16 15 14 31 31 H 1.07999 * 120.00047 * 180.25186 * 17 16 15 32 32 H 1.08004 * 119.99923 * 359.95574 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 6 2.6040 -8.4806 -0.0076 16 6 3.0768 -8.9799 -1.2070 17 6 4.0323 -9.9787 -1.2130 18 6 4.5090 -10.4873 -0.0172 19 9 5.4388 -11.4674 -0.0222 20 6 4.0310 -9.9902 1.1855 21 9 4.4953 -10.4848 2.3539 22 6 3.0781 -8.9864 1.1881 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8878 28 1 0.9424 -7.4824 0.8849 29 1 0.9444 -7.4746 -0.8950 30 1 2.7023 -8.5862 -2.1404 31 1 4.4038 -10.3650 -2.1506 32 1 2.7053 -8.5981 2.1244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176827724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:56 Heat of formation + Delta-G solvation = -166.618646 kcal Electronic energy + Delta-G solvation = -19200.310092 eV Core-core repulsion = 15568.597441 eV Total energy + Delta-G solvation = -3631.712652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.68337 -48.75977 -40.34299 -39.04937 -36.18492 -33.41631 -32.95013 -31.11426 -30.35951 -27.99126 -25.03101 -23.58602 -22.68442 -21.12569 -20.46379 -18.18704 -17.52038 -17.49346 -17.18597 -16.53444 -16.19925 -16.09522 -15.77709 -15.17032 -14.79043 -14.64325 -14.52221 -14.21639 -13.82342 -13.16129 -12.89023 -12.48090 -12.31700 -12.14168 -12.09067 -11.56508 -11.26904 -11.08282 -10.81002 -10.72637 -10.31672 -9.70907 -9.69252 -9.36869 -9.31834 -8.91764 -8.48480 -6.14296 -4.18740 0.57522 0.71563 2.46315 2.83014 3.25128 3.31503 3.34643 3.40622 3.51348 4.04150 4.16950 4.27735 4.36409 4.66768 4.77803 5.01194 5.13847 5.22578 5.25163 5.43975 5.52152 5.60201 5.69373 6.01039 6.03618 6.04080 6.44220 6.58386 6.91896 7.51276 7.57253 7.82373 8.10881 8.20688 8.87103 9.46102 10.97212 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.002928 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.591460 B = 9561.175262 C = 9649.042710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.356 6.356 12 C 0.455 3.545 13 O -0.511 6.511 14 C -0.078 4.078 15 C -0.051 4.051 16 C -0.083 4.083 17 C -0.124 4.124 18 C 0.066 3.934 19 F -0.130 7.130 20 C 0.069 3.931 21 F -0.129 7.129 22 C -0.109 4.109 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 -20.948 -1.247 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.273 6.273 12 C 0.297 3.703 13 O -0.400 6.400 14 C -0.116 4.116 15 C -0.051 4.051 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.046 3.954 19 F -0.109 7.109 20 C 0.049 3.951 21 F -0.108 7.108 22 C -0.128 4.128 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.502 -20.811 -1.197 21.138 hybrid contribution 0.870 0.749 0.257 1.176 sum 4.372 -20.062 -0.940 20.555 Atomic orbital electron populations 1.69978 1.06096 1.26927 1.49821 1.24982 0.94921 0.99418 0.94827 0.86419 0.80069 0.83120 0.77730 1.19578 1.20811 1.20804 1.21018 0.93228 0.90105 1.52149 0.92203 1.19178 0.94188 0.89038 0.98898 1.23666 0.96373 0.78629 1.01014 1.86520 1.42399 1.15794 1.82539 1.23263 0.86594 0.87103 0.73344 1.90673 1.15677 1.88271 1.45331 1.20312 0.96816 0.86969 1.07464 1.19238 0.97349 0.96002 0.92553 1.21001 0.95604 0.95155 0.98365 1.21047 0.98295 0.98166 0.96718 1.17709 0.92745 0.91380 0.93579 1.91526 1.62833 1.59263 1.97282 1.17584 0.98937 0.98159 0.80459 1.91535 1.87439 1.86482 1.45299 1.20961 0.96369 0.95493 0.99976 0.92730 0.95321 0.95334 0.92264 0.92258 0.86294 0.86105 0.83969 0.83472 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.61 5.35 -27.89 -0.15 0.46 16 10 C 0.08 1.62 5.40 37.15 0.20 1.82 16 11 O -0.36 -6.58 10.22 -39.26 -0.40 -6.98 16 12 C 0.45 7.03 7.95 36.00 0.29 7.32 16 13 O -0.51 -9.41 15.78 -18.76 -0.30 -9.71 16 14 C -0.08 -0.76 5.94 -29.04 -0.17 -0.93 16 15 C -0.05 -0.51 4.37 -104.63 -0.46 -0.97 16 16 C -0.08 -0.74 9.70 -39.58 -0.38 -1.12 16 17 C -0.12 -1.10 10.02 -39.52 -0.40 -1.50 16 18 C 0.07 0.72 7.31 -39.37 -0.29 0.44 16 19 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 20 C 0.07 0.79 7.31 -39.37 -0.29 0.50 16 21 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 22 C -0.11 -1.14 9.68 -39.53 -0.38 -1.52 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 27 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.12 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.12 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -31.86 301.06 -6.15 -38.01 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -3.34 Total: -4.89 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.44 Total: -8.80 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.70 Total: -16.69 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.86 -6.15 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176827724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.606 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds