Wall clock time and date at job start Mon Mar 30 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46870 * 299.99560 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99605 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.50693 * 109.47486 * 179.72204 * 14 12 11 16 16 C 1.38257 * 119.96320 * 269.72376 * 15 14 12 17 17 C 1.38221 * 120.07250 * 179.76648 * 16 15 14 18 18 C 1.38411 * 119.99216 * 0.50897 * 17 16 15 19 19 F 1.35104 * 120.03046 * 179.72262 * 18 17 16 20 20 C 1.38644 * 119.93397 * 359.74290 * 18 17 16 21 21 F 1.35105 * 120.03562 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96760 * 89.99761 * 15 14 12 23 23 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 25 25 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 26 26 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 27 27 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 28 28 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 29 29 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 30 30 H 1.08002 * 119.96709 * 0.02562 * 16 15 14 31 31 H 1.07999 * 120.00047 * 180.25186 * 17 16 15 32 32 H 1.08004 * 119.99923 * 359.95574 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 6 2.6040 -8.4806 -0.0076 16 6 3.0768 -8.9799 -1.2070 17 6 4.0323 -9.9787 -1.2130 18 6 4.5090 -10.4873 -0.0172 19 9 5.4388 -11.4674 -0.0222 20 6 4.0310 -9.9902 1.1855 21 9 4.4953 -10.4848 2.3539 22 6 3.0781 -8.9864 1.1881 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8878 28 1 0.9424 -7.4824 0.8849 29 1 0.9444 -7.4746 -0.8950 30 1 2.7023 -8.5862 -2.1404 31 1 4.4038 -10.3650 -2.1506 32 1 2.7053 -8.5981 2.1244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176827724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:56 Heat of formation + Delta-G solvation = -183.821925 kcal Electronic energy + Delta-G solvation = -19201.056083 eV Core-core repulsion = 15568.597441 eV Total energy + Delta-G solvation = -3632.458642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.55181 -49.63710 -41.55967 -39.96372 -37.62746 -35.43589 -33.84558 -32.28743 -31.84508 -28.96125 -26.90929 -24.35166 -23.79576 -22.81632 -21.70026 -19.04584 -18.96469 -18.33492 -18.16130 -18.01647 -17.47072 -17.39670 -17.09465 -16.44829 -16.06278 -15.61471 -15.47269 -15.16071 -14.99330 -14.39172 -14.35450 -14.18241 -13.24739 -13.17178 -13.06554 -12.88238 -12.83720 -12.57133 -12.55328 -12.29448 -11.84787 -11.50177 -11.44240 -11.31353 -10.60928 -10.11215 -9.73740 -8.26812 -6.39463 -0.22720 -0.02571 1.24203 1.41793 1.41947 1.55262 1.75902 2.36053 2.47135 2.73782 3.07926 3.23501 3.38808 3.57049 3.87456 3.98331 4.07207 4.24394 4.29474 4.34532 4.58022 4.71412 4.73469 4.79620 4.86076 4.98951 5.28002 5.30277 5.49403 5.58925 5.69836 5.77929 6.07996 6.73544 6.79768 7.30491 8.85819 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.002928 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.591460 B = 9561.175262 C = 9649.042710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.092 3.908 11 O -0.363 6.363 12 C 0.453 3.547 13 O -0.542 6.542 14 C -0.066 4.066 15 C -0.061 4.061 16 C -0.079 4.079 17 C -0.118 4.118 18 C 0.051 3.949 19 F -0.140 7.140 20 C 0.045 3.955 21 F -0.141 7.141 22 C -0.114 4.114 23 H 0.268 0.732 24 H 0.009 0.991 25 H 0.007 0.993 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -21.102 -2.113 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.280 6.280 12 C 0.298 3.702 13 O -0.432 6.432 14 C -0.102 4.102 15 C -0.061 4.061 16 C -0.097 4.097 17 C -0.137 4.137 18 C 0.031 3.969 19 F -0.118 7.118 20 C 0.025 3.975 21 F -0.120 7.120 22 C -0.132 4.132 23 H 0.077 0.923 24 H 0.027 0.973 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.174 0.826 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.576 -20.993 -2.061 21.395 hybrid contribution 0.831 0.709 0.509 1.205 sum 4.406 -20.284 -1.553 20.815 Atomic orbital electron populations 1.70087 1.07721 1.28187 1.50500 1.25923 0.95824 1.03294 0.94150 0.85310 0.78898 0.78290 0.78012 1.18753 1.20038 1.20136 1.21419 0.93660 0.91409 1.52302 0.91883 1.18981 0.94367 0.90566 0.96816 1.23105 0.94938 0.79287 1.00836 1.86509 1.42553 1.15747 1.83187 1.24396 0.86443 0.87699 0.71638 1.90667 1.17252 1.88555 1.46769 1.20472 0.96663 0.82654 1.10450 1.19380 0.97726 0.96203 0.92790 1.21388 0.94755 0.94404 0.99113 1.21366 0.97730 0.97655 0.96934 1.18019 0.93009 0.91614 0.94292 1.91499 1.63259 1.59707 1.97358 1.17852 1.00039 0.99215 0.80363 1.91495 1.87738 1.86778 1.45998 1.21150 0.96022 0.95143 1.00914 0.92336 0.97264 0.97461 0.92544 0.92240 0.83632 0.82631 0.81259 0.80876 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.55 5.35 29.85 0.16 1.71 16 10 C 0.09 3.92 5.40 71.98 0.39 4.31 16 11 O -0.36 -13.05 10.22 -51.41 -0.53 -13.57 16 12 C 0.45 13.17 7.95 71.23 0.57 13.74 16 13 O -0.54 -19.31 15.78 21.94 0.35 -18.97 16 14 C -0.07 -1.06 5.94 29.10 0.17 -0.88 16 15 C -0.06 -1.05 4.37 -19.87 -0.09 -1.14 16 16 C -0.08 -1.16 9.70 22.27 0.22 -0.94 16 17 C -0.12 -1.84 10.02 22.31 0.22 -1.62 16 18 C 0.05 1.07 7.31 22.41 0.16 1.23 16 19 F -0.14 -3.23 17.18 44.97 0.77 -2.46 16 20 C 0.05 1.02 7.31 22.41 0.16 1.19 16 21 F -0.14 -3.57 17.18 44.97 0.77 -2.79 16 22 C -0.11 -2.22 9.68 22.30 0.22 -2.00 16 23 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 27 H 0.06 2.52 8.13 -2.38 -0.02 2.50 16 28 H 0.15 1.64 8.08 -2.38 -0.02 1.62 16 29 H 0.16 1.50 8.08 -2.39 -0.02 1.48 16 30 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.49 301.06 7.70 -61.79 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: 1.14 Total: -0.94 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 2.88 Total: -13.95 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.28 Total: -54.14 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.18 Total: -32.54 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 1.55 Total: -5.25 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.49 7.70 -61.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176827724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.034 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds