Wall clock time and date at job start Mon Mar 30 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.83782 * 2 1 4 4 C 1.38259 * 120.15468 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.09159 * 180.02562 * 4 3 2 6 6 C 1.39900 * 119.82254 * 0.27462 * 4 3 2 7 7 C 1.47572 * 120.15967 * 179.75095 * 6 4 3 8 8 O 1.21487 * 120.00300 * 359.97438 * 7 6 4 9 9 O 1.34734 * 119.99919 * 180.02562 * 7 6 4 10 10 C 1.45191 * 117.00112 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47437 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99672 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00370 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99645 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47147 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47733 * 120.00064 * 16 14 12 19 19 H 1.48504 * 109.47141 * 240.00148 * 16 14 12 20 20 C 1.39678 * 119.67904 * 359.53882 * 6 4 3 21 21 C 1.38095 * 119.84388 * 0.42165 * 20 6 4 22 22 F 1.35094 * 119.91369 * 179.78948 * 21 20 6 23 23 H 1.09003 * 109.47281 * 89.99687 * 1 2 3 24 24 H 1.08998 * 109.46880 * 209.99986 * 1 2 3 25 25 H 1.09000 * 109.46729 * 329.99684 * 1 2 3 26 26 H 1.08011 * 119.92574 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47315 * 299.99499 * 10 9 7 28 28 H 1.09001 * 109.47163 * 60.00096 * 10 9 7 29 29 H 1.08995 * 109.47380 * 300.00052 * 11 10 9 30 30 H 1.09001 * 109.47247 * 60.00404 * 11 10 9 31 31 H 0.97003 * 120.00062 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.07982 * 180.17924 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1990 0.0000 4 6 3.5774 1.2066 0.0005 5 9 4.2483 2.3793 0.0011 6 6 4.2798 -0.0032 -0.0047 7 6 5.7555 -0.0037 -0.0098 8 8 6.3634 1.0482 -0.0098 9 8 6.4288 -1.1708 -0.0154 10 6 7.8787 -1.0953 -0.0206 11 6 8.4630 -2.5093 -0.0259 12 6 9.9680 -2.4311 -0.0320 13 1 10.4586 -1.4689 -0.0317 14 6 10.7185 -3.5877 -0.0369 15 7 10.1209 -4.7592 -0.0368 16 14 12.5839 -3.4906 -0.0438 17 1 13.0054 -2.0667 -0.0435 18 1 13.1193 -4.1661 1.1654 19 1 13.1100 -4.1618 -1.2596 20 6 3.5776 -1.2106 -0.0007 21 6 2.1967 -1.2025 -0.0004 22 9 1.5161 -2.3695 -0.0009 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6509 2.1322 0.0004 27 1 8.2115 -0.5611 -0.9106 28 1 8.2182 -0.5656 0.8695 29 1 8.1302 -3.0433 0.8641 30 1 8.1235 -3.0394 -0.9158 31 1 10.6489 -5.5730 -0.0406 32 1 4.1134 -2.1484 -0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177263841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:28 Heat of formation + Delta-G solvation = -165.216249 kcal Electronic energy + Delta-G solvation = -19589.144259 eV Core-core repulsion = 15957.492420 eV Total energy + Delta-G solvation = -3631.651839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.18486 -49.09809 -40.21056 -38.84944 -36.15145 -33.58795 -33.24397 -30.58275 -30.30906 -28.16309 -25.15919 -23.51099 -23.06827 -21.23666 -20.68946 -18.36519 -17.56243 -17.38530 -16.79999 -16.41815 -16.01882 -15.84602 -15.48919 -15.46731 -14.64747 -14.53530 -14.38083 -13.73907 -13.55186 -13.36033 -13.07150 -12.73719 -12.40049 -12.36878 -11.86629 -11.71400 -11.28145 -11.08404 -10.80683 -10.73256 -10.34825 -9.71712 -9.67909 -9.47664 -9.31539 -8.86197 -8.46830 -6.12653 -4.17039 0.18645 0.64735 2.39253 2.88531 3.25507 3.26705 3.34258 3.39266 3.74684 3.80752 4.11721 4.28866 4.37345 4.63862 4.86999 5.00918 5.13463 5.24249 5.24873 5.41119 5.54754 5.60790 5.66073 5.80282 6.02657 6.04739 6.36521 6.58529 6.82861 7.51649 7.58387 7.82819 8.05435 8.20990 8.88567 9.47633 10.98879 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.003712 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.745281 B = 7541.536673 C = 8426.526345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.145 4.145 4 C 0.157 3.843 5 F -0.109 7.109 6 C -0.133 4.133 7 C 0.500 3.500 8 O -0.497 6.497 9 O -0.350 6.350 10 C 0.076 3.924 11 C 0.024 3.976 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.062 4.062 21 C 0.074 3.926 22 F -0.128 7.128 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.538 9.081 0.064 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.062 4.062 3 C -0.163 4.163 4 C 0.137 3.863 5 F -0.087 7.087 6 C -0.136 4.136 7 C 0.343 3.657 8 O -0.386 6.386 9 O -0.266 6.266 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.080 4.080 21 C 0.054 3.946 22 F -0.107 7.107 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.172 0.828 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.262 9.177 0.064 22.243 hybrid contribution 1.214 0.004 -0.006 1.214 sum -19.048 9.181 0.058 21.145 Atomic orbital electron populations 1.20850 0.88955 1.04141 1.03615 1.19985 0.97663 0.90961 0.97637 1.20810 0.91327 0.99211 1.04977 1.17649 0.89695 0.80712 0.98228 1.91626 1.80321 1.44162 1.92632 1.19162 0.91586 0.92675 1.10150 1.20621 0.87667 0.83199 0.74177 1.90876 1.69879 1.32747 1.45119 1.86560 1.25455 1.31943 1.82635 1.23741 0.71386 1.03236 1.01266 1.19193 0.95071 0.88062 0.98972 1.21007 0.90241 0.93029 1.52176 0.92148 1.24982 0.99132 0.95217 0.94826 1.69979 1.35654 0.97369 1.49790 0.86407 0.84842 0.78314 0.77710 1.19565 1.20815 1.20819 1.21468 0.92193 0.99411 0.94973 1.17309 0.89510 0.81488 1.06247 1.91529 1.79586 1.45555 1.93999 0.89829 0.90332 0.90269 0.82842 0.92008 0.92015 0.95249 0.95252 0.92734 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.82 36.01 0.35 -0.32 16 2 C -0.06 -0.53 5.89 -104.48 -0.62 -1.15 16 3 C -0.14 -1.30 9.66 -39.58 -0.38 -1.69 16 4 C 0.16 2.00 7.28 -38.95 -0.28 1.71 16 5 F -0.11 -1.60 15.55 2.25 0.04 -1.57 16 6 C -0.13 -1.92 5.88 -104.93 -0.62 -2.53 16 7 C 0.50 9.16 7.89 34.54 0.27 9.44 16 8 O -0.50 -10.29 15.13 -19.26 -0.29 -10.59 16 9 O -0.35 -6.96 9.47 -40.58 -0.38 -7.34 16 10 C 0.08 1.68 5.41 37.16 0.20 1.89 16 11 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 12 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 13 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.06 -0.76 9.59 -39.10 -0.38 -1.14 16 21 C 0.07 0.79 7.23 -39.49 -0.29 0.50 16 22 F -0.13 -1.39 16.45 2.25 0.04 -1.36 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.45 7.62 -51.93 -0.40 0.05 16 25 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.17 2.04 7.61 -52.49 -0.40 1.64 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -31.27 297.45 -5.99 -37.26 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -3.29 Total: -5.51 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.29 Total: -6.25 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.74 Total: -25.47 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.68 Total: -17.93 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.07 Total: -2.92 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.27 -5.99 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177263841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.953 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds