Wall clock time and date at job start Mon Mar 30 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.83782 * 2 1 4 4 C 1.38259 * 120.15468 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.09159 * 180.02562 * 4 3 2 6 6 C 1.39900 * 119.82254 * 0.27462 * 4 3 2 7 7 C 1.47572 * 120.15967 * 179.75095 * 6 4 3 8 8 O 1.21487 * 120.00300 * 359.97438 * 7 6 4 9 9 O 1.34734 * 119.99919 * 180.02562 * 7 6 4 10 10 C 1.45191 * 117.00112 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47437 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99672 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00370 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99645 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47147 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47733 * 120.00064 * 16 14 12 19 19 H 1.48504 * 109.47141 * 240.00148 * 16 14 12 20 20 C 1.39678 * 119.67904 * 359.53882 * 6 4 3 21 21 C 1.38095 * 119.84388 * 0.42165 * 20 6 4 22 22 F 1.35094 * 119.91369 * 179.78948 * 21 20 6 23 23 H 1.09003 * 109.47281 * 89.99687 * 1 2 3 24 24 H 1.08998 * 109.46880 * 209.99986 * 1 2 3 25 25 H 1.09000 * 109.46729 * 329.99684 * 1 2 3 26 26 H 1.08011 * 119.92574 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47315 * 299.99499 * 10 9 7 28 28 H 1.09001 * 109.47163 * 60.00096 * 10 9 7 29 29 H 1.08995 * 109.47380 * 300.00052 * 11 10 9 30 30 H 1.09001 * 109.47247 * 60.00404 * 11 10 9 31 31 H 0.97003 * 120.00062 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.07982 * 180.17924 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1990 0.0000 4 6 3.5774 1.2066 0.0005 5 9 4.2483 2.3793 0.0011 6 6 4.2798 -0.0032 -0.0047 7 6 5.7555 -0.0037 -0.0098 8 8 6.3634 1.0482 -0.0098 9 8 6.4288 -1.1708 -0.0154 10 6 7.8787 -1.0953 -0.0206 11 6 8.4630 -2.5093 -0.0259 12 6 9.9680 -2.4311 -0.0320 13 1 10.4586 -1.4689 -0.0317 14 6 10.7185 -3.5877 -0.0369 15 7 10.1209 -4.7592 -0.0368 16 14 12.5839 -3.4906 -0.0438 17 1 13.0054 -2.0667 -0.0435 18 1 13.1193 -4.1661 1.1654 19 1 13.1100 -4.1618 -1.2596 20 6 3.5776 -1.2106 -0.0007 21 6 2.1967 -1.2025 -0.0004 22 9 1.5161 -2.3695 -0.0009 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6509 2.1322 0.0004 27 1 8.2115 -0.5611 -0.9106 28 1 8.2182 -0.5656 0.8695 29 1 8.1302 -3.0433 0.8641 30 1 8.1235 -3.0394 -0.9158 31 1 10.6489 -5.5730 -0.0406 32 1 4.1134 -2.1484 -0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177263841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:28 Heat of formation + Delta-G solvation = -182.197053 kcal Electronic energy + Delta-G solvation = -19589.880602 eV Core-core repulsion = 15957.492420 eV Total energy + Delta-G solvation = -3632.388182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.14562 -50.05357 -41.63135 -39.87504 -37.77376 -35.49616 -34.31313 -32.33664 -31.42195 -29.07235 -27.06368 -24.47975 -24.22728 -22.92824 -22.09297 -19.63235 -18.69390 -18.49877 -18.33818 -17.77074 -17.68328 -16.99671 -16.80419 -16.50581 -16.42331 -15.45812 -15.42848 -15.13971 -14.50683 -14.39500 -14.23707 -14.19655 -13.84028 -13.25102 -13.08624 -12.94013 -12.74231 -12.66881 -12.62387 -12.57096 -11.94581 -11.58625 -11.56079 -11.40088 -10.63740 -10.32687 -9.78384 -8.29006 -6.42226 -0.81025 -0.23129 1.18560 1.38649 1.40975 1.47443 1.56573 2.18821 2.38283 2.82911 2.88917 3.05636 3.25689 3.48308 3.62176 3.86134 4.17050 4.17479 4.35581 4.41731 4.52676 4.62388 4.71067 4.78044 4.80829 5.06648 5.14318 5.16640 5.42155 5.42965 5.53832 5.70108 6.03616 6.50575 6.71179 7.27642 8.83817 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.003712 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.745281 B = 7541.536673 C = 8426.526345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 C -0.124 4.124 4 C 0.147 3.853 5 F -0.124 7.124 6 C -0.159 4.159 7 C 0.499 3.501 8 O -0.527 6.527 9 O -0.355 6.355 10 C 0.091 3.909 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.065 0.935 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.066 4.066 21 C 0.071 3.929 22 F -0.129 7.129 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.194 0.806 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.268 0.732 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.249 10.172 0.050 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.039 4.039 3 C -0.142 4.142 4 C 0.127 3.873 5 F -0.102 7.102 6 C -0.161 4.161 7 C 0.345 3.655 8 O -0.418 6.418 9 O -0.271 6.271 10 C 0.018 3.982 11 C -0.006 4.006 12 C -0.588 4.588 13 H 0.083 0.917 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.798 3.202 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.085 4.085 21 C 0.052 3.948 22 F -0.107 7.107 23 H 0.119 0.881 24 H 0.098 0.902 25 H 0.124 0.876 26 H 0.211 0.789 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.998 10.270 0.051 24.278 hybrid contribution 1.553 -0.351 -0.003 1.592 sum -20.446 9.920 0.048 22.725 Atomic orbital electron populations 1.21030 0.85966 1.05606 1.05061 1.20406 0.99530 0.89691 0.94314 1.21181 0.89462 1.00945 1.02615 1.17960 0.91004 0.79471 0.98873 1.91588 1.80968 1.44822 1.92869 1.18949 0.88916 0.94371 1.13887 1.21309 0.89278 0.82024 0.72880 1.90846 1.70824 1.33307 1.46833 1.86543 1.24110 1.33326 1.83154 1.23273 0.72983 1.00681 1.01300 1.18995 0.94905 0.89795 0.96904 1.21388 0.91346 0.93528 1.52558 0.91708 1.25957 1.04580 0.94678 0.94027 1.70095 1.37838 0.98207 1.50340 0.85259 0.78165 0.78729 0.78049 1.18679 1.20003 1.20012 1.21359 0.93244 0.98410 0.95502 1.17377 0.88802 0.82337 1.06291 1.91533 1.79340 1.45822 1.94004 0.88103 0.90162 0.87613 0.78900 0.91928 0.91938 0.97287 0.97291 0.92288 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.82 71.24 0.70 -0.09 16 2 C -0.04 -0.53 5.89 -19.77 -0.12 -0.65 16 3 C -0.12 -1.81 9.66 22.27 0.22 -1.60 16 4 C 0.15 3.56 7.28 22.68 0.17 3.73 16 5 F -0.12 -3.58 15.55 44.97 0.70 -2.88 16 6 C -0.16 -4.62 5.88 -20.06 -0.12 -4.74 16 7 C 0.50 19.01 7.89 70.29 0.55 19.56 16 8 O -0.53 -22.58 15.13 19.88 0.30 -22.28 16 9 O -0.35 -14.81 9.47 -56.44 -0.53 -15.34 16 10 C 0.09 4.18 5.41 71.98 0.39 4.57 16 11 C 0.03 1.69 5.35 29.85 0.16 1.85 16 12 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 13 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 14 C 0.01 0.38 5.46 84.65 0.46 0.84 16 15 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 16 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C -0.07 -1.64 9.59 22.58 0.22 -1.43 16 21 C 0.07 1.40 7.23 22.33 0.16 1.56 16 22 F -0.13 -2.58 16.45 44.97 0.74 -1.84 16 23 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.08 0.58 7.62 -2.39 -0.02 0.56 16 25 H 0.11 0.22 8.08 -2.39 -0.02 0.20 16 26 H 0.19 1.33 8.06 -2.90 -0.02 1.31 16 27 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.16 4.07 7.61 -2.91 -0.02 4.05 16 Total: -1.00 -69.30 297.45 7.69 -61.61 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: 1.15 Total: -2.33 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 3.02 Total: -7.62 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.21 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.23 Total: -37.62 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 1.44 Total: -4.73 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.30 7.69 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177263841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.585 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds