Wall clock time and date at job start Mon Mar 30 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33394 * 125.20048 * 2 1 4 4 C 1.38427 * 114.91995 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.53904 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47055 * 90.02466 * 5 4 3 7 7 C 1.81396 * 103.00223 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47425 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47421 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47340 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99868 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00156 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99771 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00021 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47167 * 60.00134 * 14 12 10 16 16 H 1.48502 * 109.47223 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47436 * 300.00055 * 14 12 10 18 18 C 1.33386 * 114.91794 * 359.97438 * 4 3 2 19 19 C 1.50700 * 125.19808 * 180.02562 * 18 4 3 20 20 S 1.75878 * 125.20480 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.46630 * 90.00279 * 1 2 3 22 22 H 1.09002 * 109.46774 * 210.00149 * 1 2 3 23 23 H 1.08994 * 109.47373 * 330.00464 * 1 2 3 24 24 H 1.08000 * 122.53490 * 359.70066 * 3 2 1 25 25 H 1.08997 * 109.47317 * 210.02567 * 5 4 3 26 26 H 1.09007 * 109.47465 * 330.02582 * 5 4 3 27 27 H 1.09000 * 109.47190 * 300.00039 * 7 6 5 28 28 H 1.09011 * 109.47215 * 60.00263 * 7 6 5 29 29 H 1.09000 * 109.47043 * 300.00221 * 8 7 6 30 30 H 1.08999 * 109.47055 * 60.00072 * 8 7 6 31 31 H 1.09000 * 109.47179 * 300.00121 * 9 8 7 32 32 H 1.08999 * 109.46960 * 59.99998 * 9 8 7 33 33 H 0.96998 * 119.99723 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46830 * 180.02562 * 19 18 4 35 35 H 1.09005 * 109.47261 * 300.02265 * 19 18 4 36 36 H 1.08995 * 109.47577 * 60.02103 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8430 0.0006 5 6 4.6623 1.9483 0.0001 6 16 5.0733 2.3925 1.7102 7 6 6.2990 3.7140 1.5052 8 6 6.7535 4.2058 2.8808 9 6 7.7868 5.3209 2.7080 10 6 8.2350 5.8049 4.0629 11 1 7.8236 5.3619 4.9579 12 6 9.1702 6.8134 4.1601 13 7 9.6708 7.3532 3.0703 14 14 9.7263 7.4128 5.8396 15 1 10.3347 6.2857 6.5910 16 1 10.7291 8.4952 5.6718 17 1 8.5566 7.9347 6.5912 18 6 3.9751 -0.4476 0.0016 19 6 5.3861 -0.9769 0.0029 20 16 2.5210 -1.4371 0.0006 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.8668 2.0895 -0.0048 25 1 5.5620 1.6097 -0.5136 26 1 4.2564 2.8196 -0.5141 27 1 7.1577 3.3308 0.9540 28 1 5.8526 4.5412 0.9533 29 1 5.8946 4.5892 3.4317 30 1 7.1998 3.3789 3.4332 31 1 8.6458 4.9380 2.1570 32 1 7.3402 6.1477 2.1558 33 1 10.3284 8.0629 3.1386 34 1 5.3653 -2.0667 0.0030 35 1 5.9075 -0.6235 -0.8868 36 1 5.9060 -0.6232 0.8932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178393715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:32 Heat of formation + Delta-G solvation = -5.092376 kcal Electronic energy + Delta-G solvation = -15204.667126 eV Core-core repulsion = 12712.385131 eV Total energy + Delta-G solvation = -2492.281995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70844 -34.43614 -33.59242 -32.01114 -30.15334 -28.59283 -27.40474 -24.51133 -23.40049 -21.81062 -20.23015 -18.46040 -17.23365 -16.44474 -15.76578 -15.13367 -14.67152 -14.60887 -14.36821 -13.83015 -13.69714 -13.43127 -13.16919 -12.84399 -12.79617 -12.45774 -12.00174 -11.88582 -11.65836 -11.57325 -11.41301 -10.91842 -10.85345 -10.83595 -10.54316 -9.80378 -9.77722 -9.28662 -9.11534 -8.57253 -8.36107 -8.35813 -7.39248 -6.01377 -4.03881 0.76773 1.42952 1.74736 1.82734 2.76963 3.00981 3.33947 3.37832 3.41002 4.45764 4.53852 4.67790 4.92557 4.99053 5.13988 5.23360 5.25683 5.34481 5.40899 5.49332 5.52831 5.55374 5.64902 5.66630 5.86602 6.00296 6.14965 6.22101 6.39203 6.57004 6.73398 7.03119 7.63732 7.76332 7.97672 8.39707 9.02423 9.60253 11.09989 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043047 B = 0.002865 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.296337 B = 9769.676484 C = 9969.162526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.186 4.186 3 C -0.118 4.118 4 C -0.089 4.089 5 C -0.028 4.028 6 S -0.267 6.267 7 C -0.076 4.076 8 C -0.094 4.094 9 C 0.028 3.972 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.159 4.159 19 C -0.085 4.085 20 S 0.090 5.910 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.140 0.860 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 -16.900 -9.764 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.303 4.303 3 C -0.149 4.149 4 C -0.102 4.102 5 C -0.178 4.178 6 S -0.037 6.037 7 C -0.224 4.224 8 C -0.133 4.133 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.279 4.279 19 C -0.144 4.144 20 S 0.355 5.645 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.158 0.842 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.933 -18.750 -8.895 26.164 hybrid contribution 1.117 2.479 -0.276 2.733 sum -14.816 -16.271 -9.171 23.841 Atomic orbital electron populations 1.20310 0.87815 1.03162 1.02564 1.24308 0.99813 0.95447 1.10721 1.19904 0.92052 0.99484 1.03428 1.18123 0.93827 0.92884 1.05325 1.21899 0.99714 0.98782 0.97394 1.87086 1.56543 1.49706 1.10407 1.23647 0.97843 0.96838 1.04066 1.21457 1.00192 0.99950 0.91729 1.19096 0.92708 0.91951 0.97337 1.21195 1.23298 1.18853 0.92603 0.92597 1.25020 0.96297 0.96468 0.96640 1.69955 1.29778 1.26323 1.27526 0.86630 0.78450 0.78406 0.84371 1.20182 1.21275 1.20185 1.24260 0.99185 0.95653 1.08817 1.20385 0.89712 1.00617 1.03657 1.84109 0.96414 1.09647 1.74328 0.90905 0.91435 0.90458 0.84230 0.89524 0.89522 0.90610 0.90611 0.92427 0.92425 0.96457 0.96458 0.92912 0.91576 0.90596 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.38 36.01 0.37 -0.21 16 2 C -0.19 -1.91 6.51 -36.00 -0.23 -2.14 16 3 C -0.12 -1.35 9.85 -41.20 -0.41 -1.76 16 4 C -0.09 -1.08 5.06 -106.25 -0.54 -1.62 16 5 C -0.03 -0.35 5.92 36.00 0.21 -0.14 16 6 S -0.27 -4.21 21.72 -107.50 -2.33 -6.55 16 7 C -0.08 -1.32 5.94 37.16 0.22 -1.10 16 8 C -0.09 -1.99 5.16 -26.73 -0.14 -2.12 16 9 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 10 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.16 -1.80 6.50 -36.00 -0.23 -2.04 16 19 C -0.09 -0.82 9.46 36.01 0.34 -0.48 16 20 S 0.09 0.92 23.31 -107.50 -2.51 -1.59 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.09 1.00 7.34 -51.93 -0.38 0.62 16 26 H 0.09 1.01 8.13 -51.92 -0.42 0.59 16 27 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 28 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -30.48 330.56 -10.92 -41.40 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.83 Total: -4.10 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -0.95 Total: -24.67 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -4.84 Total: -8.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.48 -10.92 -41.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178393715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.310 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds