Wall clock time and date at job start Mon Mar 30 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33394 * 125.20048 * 2 1 4 4 C 1.38427 * 114.91995 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.53904 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47055 * 90.02466 * 5 4 3 7 7 C 1.81396 * 103.00223 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47425 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47421 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47340 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99868 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00156 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99771 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00021 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47167 * 60.00134 * 14 12 10 16 16 H 1.48502 * 109.47223 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47436 * 300.00055 * 14 12 10 18 18 C 1.33386 * 114.91794 * 359.97438 * 4 3 2 19 19 C 1.50700 * 125.19808 * 180.02562 * 18 4 3 20 20 S 1.75878 * 125.20480 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.46630 * 90.00279 * 1 2 3 22 22 H 1.09002 * 109.46774 * 210.00149 * 1 2 3 23 23 H 1.08994 * 109.47373 * 330.00464 * 1 2 3 24 24 H 1.08000 * 122.53490 * 359.70066 * 3 2 1 25 25 H 1.08997 * 109.47317 * 210.02567 * 5 4 3 26 26 H 1.09007 * 109.47465 * 330.02582 * 5 4 3 27 27 H 1.09000 * 109.47190 * 300.00039 * 7 6 5 28 28 H 1.09011 * 109.47215 * 60.00263 * 7 6 5 29 29 H 1.09000 * 109.47043 * 300.00221 * 8 7 6 30 30 H 1.08999 * 109.47055 * 60.00072 * 8 7 6 31 31 H 1.09000 * 109.47179 * 300.00121 * 9 8 7 32 32 H 1.08999 * 109.46960 * 59.99998 * 9 8 7 33 33 H 0.96998 * 119.99723 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46830 * 180.02562 * 19 18 4 35 35 H 1.09005 * 109.47261 * 300.02265 * 19 18 4 36 36 H 1.08995 * 109.47577 * 60.02103 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8430 0.0006 5 6 4.6623 1.9483 0.0001 6 16 5.0733 2.3925 1.7102 7 6 6.2990 3.7140 1.5052 8 6 6.7535 4.2058 2.8808 9 6 7.7868 5.3209 2.7080 10 6 8.2350 5.8049 4.0629 11 1 7.8236 5.3619 4.9579 12 6 9.1702 6.8134 4.1601 13 7 9.6708 7.3532 3.0703 14 14 9.7263 7.4128 5.8396 15 1 10.3347 6.2857 6.5910 16 1 10.7291 8.4952 5.6718 17 1 8.5566 7.9347 6.5912 18 6 3.9751 -0.4476 0.0016 19 6 5.3861 -0.9769 0.0029 20 16 2.5210 -1.4371 0.0006 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.8668 2.0895 -0.0048 25 1 5.5620 1.6097 -0.5136 26 1 4.2564 2.8196 -0.5141 27 1 7.1577 3.3308 0.9540 28 1 5.8526 4.5412 0.9533 29 1 5.8946 4.5892 3.4317 30 1 7.1998 3.3789 3.4332 31 1 8.6458 4.9380 2.1570 32 1 7.3402 6.1477 2.1558 33 1 10.3284 8.0629 3.1386 34 1 5.3653 -2.0667 0.0030 35 1 5.9075 -0.6235 -0.8868 36 1 5.9060 -0.6232 0.8932 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178393715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:32 Heat of formation + Delta-G solvation = -19.048180 kcal Electronic energy + Delta-G solvation = -15205.272295 eV Core-core repulsion = 12712.385131 eV Total energy + Delta-G solvation = -2492.887164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53977 -36.36106 -34.34316 -34.04592 -30.96790 -29.59516 -29.15171 -25.48455 -25.15844 -22.75393 -21.95878 -19.33514 -18.53897 -18.03322 -17.06321 -16.56285 -16.23845 -15.96655 -15.46010 -14.73506 -14.63760 -14.41292 -14.24836 -14.08693 -13.77159 -13.73217 -13.43591 -13.34909 -12.79762 -12.73988 -12.60990 -12.53233 -12.33166 -12.21921 -11.69894 -11.65072 -11.43741 -11.20834 -10.85762 -10.56382 -9.37267 -9.21547 -8.64523 -8.21620 -6.32812 -0.10472 0.61160 0.69493 0.98568 1.40106 1.43078 1.51042 1.58936 2.01611 2.40808 3.11630 3.73715 3.84559 4.04264 4.06863 4.11363 4.25797 4.41477 4.48091 4.58048 4.60616 4.71726 4.74097 4.77329 4.81872 4.97390 5.04734 5.12936 5.13624 5.23668 5.39198 5.48089 5.56183 5.67798 5.81573 6.21923 6.82629 7.36357 8.89978 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043047 B = 0.002865 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.296337 B = 9769.676484 C = 9969.162526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.187 4.187 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.015 4.015 6 S -0.284 6.284 7 C -0.070 4.070 8 C -0.080 4.080 9 C 0.032 3.968 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.965 3.035 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.170 4.170 19 C -0.086 4.086 20 S 0.109 5.891 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.054 0.946 31 H -0.003 1.003 32 H -0.004 1.004 33 H 0.265 0.735 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 -17.930 -9.570 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.304 4.304 3 C -0.169 4.169 4 C -0.119 4.119 5 C -0.164 4.164 6 S -0.055 6.055 7 C -0.218 4.218 8 C -0.119 4.119 9 C -0.007 4.007 10 C -0.585 4.585 11 H 0.076 0.924 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.290 4.290 19 C -0.144 4.144 20 S 0.373 5.627 21 H 0.105 0.895 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.162 0.838 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.901 -19.784 -8.696 27.435 hybrid contribution 1.336 2.704 -0.408 3.044 sum -15.564 -17.080 -9.105 24.837 Atomic orbital electron populations 1.20428 0.85859 1.03965 1.03716 1.24722 1.01245 0.95122 1.09288 1.20041 0.92026 1.00204 1.04637 1.18195 0.94071 0.93000 1.06673 1.21913 1.00468 0.99445 0.94617 1.87092 1.55682 1.48666 1.14025 1.23367 0.98864 0.97892 1.01649 1.21159 0.98577 0.98183 0.93972 1.18970 0.93132 0.92768 0.95833 1.21647 1.23756 1.19362 0.93743 0.92358 1.25960 0.96273 0.96547 1.00864 1.70078 1.30337 1.26862 1.29930 0.85506 0.78232 0.78081 0.79288 1.19184 1.20624 1.19222 1.24569 1.00408 0.95856 1.08195 1.20432 0.88836 1.01555 1.03591 1.84033 0.95690 1.09274 1.73672 0.89497 0.90480 0.89800 0.83786 0.88479 0.88681 0.90087 0.90263 0.92837 0.92719 0.98461 0.98538 0.92651 0.90148 0.89575 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.38 71.24 0.74 -0.27 16 2 C -0.19 -3.50 6.51 24.59 0.16 -3.34 16 3 C -0.14 -2.99 9.85 21.22 0.21 -2.78 16 4 C -0.11 -2.45 5.06 -20.92 -0.11 -2.56 16 5 C -0.01 -0.35 5.92 71.23 0.42 0.07 16 6 S -0.28 -8.78 21.72 -56.49 -1.23 -10.00 16 7 C -0.07 -2.41 5.94 71.98 0.43 -1.99 16 8 C -0.08 -3.42 5.16 30.59 0.16 -3.26 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 14 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 C -0.17 -3.60 6.50 24.59 0.16 -3.44 16 19 C -0.09 -1.52 9.46 71.24 0.67 -0.85 16 20 S 0.11 2.01 23.31 -56.49 -1.32 0.69 16 21 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.10 2.10 7.34 -2.39 -0.02 2.08 16 26 H 0.09 2.10 8.13 -2.39 -0.02 2.08 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.33 7.93 -2.38 -0.02 1.32 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.82 330.56 4.49 -60.33 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.03 Total: 6.37 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 3.69 Total: -47.45 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -2.54 Total: -9.31 kcal Total: -64.82 4.49 -60.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178393715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.282 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds