Wall clock time and date at job start Mon Mar 30 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38219 * 119.98914 * 2 1 4 4 C 1.38431 * 119.97663 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.02917 * 179.97438 * 4 3 2 6 6 C 1.38487 * 119.94714 * 359.97438 * 4 3 2 7 7 C 1.38175 * 119.97437 * 359.74550 * 6 4 3 8 8 C 1.38220 * 119.98628 * 179.97438 * 2 1 3 9 9 C 1.50705 * 119.97269 * 359.97438 * 8 2 1 10 10 S 1.81398 * 109.47136 * 90.00351 * 9 8 2 11 11 O 1.42102 * 109.47085 * 63.60688 * 10 9 8 12 12 C 1.81399 * 103.00088 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.46810 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00355 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99771 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46889 * 89.99924 * 18 16 14 20 20 H 1.48498 * 109.47131 * 210.00227 * 18 16 14 21 21 H 1.48500 * 109.47362 * 330.00383 * 18 16 14 22 22 H 1.08998 * 109.46905 * 270.02590 * 1 2 3 23 23 H 1.09007 * 109.46962 * 30.01827 * 1 2 3 24 24 H 1.08995 * 109.47189 * 150.02023 * 1 2 3 25 25 H 1.08000 * 120.01141 * 359.95708 * 3 2 1 26 26 H 1.07998 * 120.00990 * 180.02562 * 6 4 3 27 27 H 1.08003 * 119.99109 * 180.25050 * 7 6 4 28 28 H 1.09002 * 109.47378 * 330.00481 * 9 8 2 29 29 H 1.09000 * 109.47022 * 210.00082 * 9 8 2 30 30 H 1.09000 * 109.47070 * 300.00061 * 12 10 9 31 31 H 1.09001 * 109.46593 * 60.00058 * 12 10 9 32 32 H 1.09000 * 109.47486 * 299.99969 * 13 12 10 33 33 H 1.09001 * 109.47362 * 60.00691 * 13 12 10 34 34 H 0.96991 * 119.99886 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0033 0.0016 7 6 3.5805 -1.1988 0.0075 8 6 2.1978 -1.1972 0.0005 9 6 1.4434 -2.5018 0.0017 10 16 1.1401 -3.0264 -1.7081 11 8 2.3808 -3.2783 -2.3534 12 6 0.2385 -4.5870 -1.5022 13 6 -0.0975 -5.1670 -2.8776 14 6 -0.8470 -6.4632 -2.7066 15 1 -1.0626 -6.8357 -1.7161 16 6 -1.2577 -7.1735 -3.8147 17 7 -1.9122 -8.3044 -3.6655 18 14 -0.8855 -6.5288 -5.5280 19 1 0.4255 -7.0584 -5.9822 20 1 -1.9494 -6.9705 -6.4651 21 1 -0.8364 -5.0449 -5.4987 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6579 2.1325 -0.0007 26 1 5.3532 -0.0047 0.0024 27 1 4.1192 -2.1349 0.0124 28 1 0.4912 -2.3704 0.5157 29 1 2.0321 -3.2615 0.5158 30 1 0.8578 -5.2943 -0.9506 31 1 -0.6835 -4.4038 -0.9504 32 1 -0.7169 -4.4595 -3.4289 33 1 0.8243 -5.3501 -3.4298 34 1 -2.2014 -8.8038 -4.4451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190853134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:14 Heat of formation + Delta-G solvation = -74.207707 kcal Electronic energy + Delta-G solvation = -17647.464457 eV Core-core repulsion = 14585.972221 eV Total energy + Delta-G solvation = -3061.492236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.03985 -39.58177 -35.32744 -33.74075 -33.30523 -32.30691 -31.28393 -27.86500 -26.60209 -25.52485 -22.62911 -21.41870 -20.66633 -17.42203 -17.35705 -16.88294 -16.72653 -15.85347 -15.77621 -15.09825 -14.59870 -14.26225 -14.18244 -13.90976 -13.70198 -13.58159 -13.38246 -12.77064 -12.65471 -12.42851 -11.98145 -11.82084 -11.62945 -11.59878 -11.12760 -11.06840 -10.72167 -10.26320 -10.00832 -9.67069 -9.36126 -9.09999 -8.61499 -8.53415 -7.80531 -6.11817 -4.11628 0.83893 1.03430 1.88701 2.96657 3.28594 3.35864 3.38472 3.41989 4.05234 4.06271 4.39410 4.48514 4.51011 4.69860 4.91026 4.97631 5.21386 5.25852 5.42089 5.42869 5.52491 5.59974 5.77900 5.83870 5.90404 5.93819 5.99733 6.10911 6.35462 6.54718 6.72069 7.01847 7.14000 7.65086 8.43977 8.90930 9.49136 11.01128 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.003806 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.899142 B = 7355.759886 C = 7487.064327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.054 4.054 3 C -0.152 4.152 4 C 0.093 3.907 5 F -0.143 7.143 6 C -0.155 4.155 7 C -0.079 4.079 8 C -0.067 4.067 9 C -0.417 4.417 10 S 1.215 4.785 11 O -0.843 6.843 12 C -0.409 4.409 13 C 0.003 3.997 14 C -0.519 4.519 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.262 1.262 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.018 0.982 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 20.199 8.739 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.171 4.171 4 C 0.074 3.926 5 F -0.121 7.121 6 C -0.174 4.174 7 C -0.099 4.099 8 C -0.068 4.068 9 C -0.551 4.551 10 S 1.416 4.584 11 O -0.839 6.839 12 C -0.549 4.549 13 C -0.036 4.036 14 C -0.559 4.559 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.187 1.187 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.155 0.845 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.046 0.954 33 H 0.036 0.964 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.975 20.549 7.818 22.542 hybrid contribution 1.605 -1.288 0.323 2.083 sum 6.580 19.261 8.141 21.922 Atomic orbital electron populations 1.20966 0.89925 1.04022 1.03186 1.19614 0.96716 0.91208 0.97948 1.20966 0.92076 0.99207 1.04834 1.17675 0.90245 0.81162 1.03567 1.91486 1.80359 1.46258 1.94029 1.21083 1.00849 0.91143 1.04307 1.20956 0.93597 0.97874 0.97424 1.19100 0.93177 0.93171 1.01351 1.26837 1.06232 0.99598 1.22391 1.70501 0.99760 1.02853 0.85300 1.93110 1.43618 1.84771 1.62360 1.27457 1.08381 1.12588 1.06473 1.19251 0.97003 0.97457 0.89842 1.21020 1.35606 1.04187 0.95041 0.90832 1.25013 0.94447 0.94615 0.99255 1.69896 1.38687 1.14831 1.30474 0.86841 0.78366 0.80177 0.84412 1.20140 1.21031 1.18655 0.90373 0.90660 0.90089 0.84528 0.84830 0.85153 0.85397 0.88620 0.90259 0.86967 0.95391 0.96402 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.19 36.01 0.33 -0.50 16 2 C -0.05 -0.53 5.88 -104.63 -0.62 -1.14 16 3 C -0.15 -1.51 9.68 -39.52 -0.38 -1.89 16 4 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 5 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 6 C -0.16 -1.78 10.03 -39.51 -0.40 -2.17 16 7 C -0.08 -0.98 9.70 -39.59 -0.38 -1.37 16 8 C -0.07 -0.78 5.14 -104.62 -0.54 -1.31 16 9 C -0.42 -4.69 5.31 36.01 0.19 -4.50 16 10 S 1.21 17.64 12.78 -107.50 -1.37 16.27 16 11 O -0.84 -17.42 18.14 -35.23 -0.64 -18.06 16 12 C -0.41 -7.34 5.86 37.16 0.22 -7.12 16 13 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 14 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 18 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 22 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 24 H 0.08 0.47 6.37 -51.93 -0.33 0.14 16 25 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 26 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.13 1.04 6.70 -51.92 -0.35 0.69 16 29 H 0.10 1.13 8.08 -51.92 -0.42 0.71 16 30 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.11 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -35.55 306.53 -8.06 -43.61 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.41 Total: -2.70 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: -2.41 Total: -32.29 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.64 Total: -18.06 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 17.64 SS G_CDS: -1.37 Total: 16.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.55 -8.06 -43.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190853134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.594 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds