Wall clock time and date at job start Mon Mar 30 2020 00:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38219 * 119.98914 * 2 1 4 4 C 1.38431 * 119.97663 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.02917 * 179.97438 * 4 3 2 6 6 C 1.38487 * 119.94714 * 359.97438 * 4 3 2 7 7 C 1.38175 * 119.97437 * 359.74550 * 6 4 3 8 8 C 1.38220 * 119.98628 * 179.97438 * 2 1 3 9 9 C 1.50705 * 119.97269 * 359.97438 * 8 2 1 10 10 S 1.81398 * 109.47136 * 90.00351 * 9 8 2 11 11 O 1.42102 * 109.47085 * 63.60688 * 10 9 8 12 12 C 1.81399 * 103.00088 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.46810 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00355 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99771 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46889 * 89.99924 * 18 16 14 20 20 H 1.48498 * 109.47131 * 210.00227 * 18 16 14 21 21 H 1.48500 * 109.47362 * 330.00383 * 18 16 14 22 22 H 1.08998 * 109.46905 * 270.02590 * 1 2 3 23 23 H 1.09007 * 109.46962 * 30.01827 * 1 2 3 24 24 H 1.08995 * 109.47189 * 150.02023 * 1 2 3 25 25 H 1.08000 * 120.01141 * 359.95708 * 3 2 1 26 26 H 1.07998 * 120.00990 * 180.02562 * 6 4 3 27 27 H 1.08003 * 119.99109 * 180.25050 * 7 6 4 28 28 H 1.09002 * 109.47378 * 330.00481 * 9 8 2 29 29 H 1.09000 * 109.47022 * 210.00082 * 9 8 2 30 30 H 1.09000 * 109.47070 * 300.00061 * 12 10 9 31 31 H 1.09001 * 109.46593 * 60.00058 * 12 10 9 32 32 H 1.09000 * 109.47486 * 299.99969 * 13 12 10 33 33 H 1.09001 * 109.47362 * 60.00691 * 13 12 10 34 34 H 0.96991 * 119.99886 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 0.0005 5 9 4.2585 2.3663 0.0000 6 6 4.2733 -0.0033 0.0016 7 6 3.5805 -1.1988 0.0075 8 6 2.1978 -1.1972 0.0005 9 6 1.4434 -2.5018 0.0017 10 16 1.1401 -3.0264 -1.7081 11 8 2.3808 -3.2783 -2.3534 12 6 0.2385 -4.5870 -1.5022 13 6 -0.0975 -5.1670 -2.8776 14 6 -0.8470 -6.4632 -2.7066 15 1 -1.0626 -6.8357 -1.7161 16 6 -1.2577 -7.1735 -3.8147 17 7 -1.9122 -8.3044 -3.6655 18 14 -0.8855 -6.5288 -5.5280 19 1 0.4255 -7.0584 -5.9822 20 1 -1.9494 -6.9705 -6.4651 21 1 -0.8364 -5.0449 -5.4987 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6579 2.1325 -0.0007 26 1 5.3532 -0.0047 0.0024 27 1 4.1192 -2.1349 0.0124 28 1 0.4912 -2.3704 0.5157 29 1 2.0321 -3.2615 0.5158 30 1 0.8578 -5.2943 -0.9506 31 1 -0.6835 -4.4038 -0.9504 32 1 -0.7169 -4.4595 -3.4289 33 1 0.8243 -5.3501 -3.4298 34 1 -2.2014 -8.8038 -4.4451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190853134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:13 Heat of formation + Delta-G solvation = -97.834846 kcal Electronic energy + Delta-G solvation = -17648.489007 eV Core-core repulsion = 14585.972221 eV Total energy + Delta-G solvation = -3062.516786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.91517 -40.39314 -36.77535 -35.70283 -34.09229 -33.24741 -33.12455 -28.63876 -27.73326 -27.07514 -23.50293 -22.81866 -21.89510 -19.20367 -18.34598 -18.21644 -17.61407 -16.78800 -16.71419 -16.48331 -16.06225 -15.84225 -15.35368 -14.93374 -14.87045 -14.66369 -14.32426 -14.11907 -13.87297 -13.50470 -13.13718 -13.05472 -12.81987 -12.66594 -12.49397 -12.29508 -11.97268 -11.90488 -11.78212 -11.54697 -11.03263 -10.80313 -9.90146 -9.60271 -8.99997 -8.32117 -6.36951 -0.08926 0.22422 0.76608 1.35348 1.37151 1.48216 1.77297 2.34116 2.57508 2.85728 3.03130 3.23934 3.61765 3.70661 3.92373 4.08377 4.20050 4.23285 4.39018 4.50977 4.69448 4.78210 4.84819 4.86023 5.02307 5.03885 5.13472 5.30792 5.32728 5.33808 5.46082 5.56453 5.58182 5.92629 6.24241 6.70269 7.27724 8.84132 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.003806 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.899142 B = 7355.759886 C = 7487.064327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 C -0.151 4.151 4 C 0.082 3.918 5 F -0.147 7.147 6 C -0.168 4.168 7 C -0.099 4.099 8 C -0.087 4.087 9 C -0.403 4.403 10 S 1.275 4.725 11 O -0.908 6.908 12 C -0.418 4.418 13 C -0.002 4.002 14 C -0.529 4.529 15 H 0.038 0.962 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.936 3.064 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.232 1.232 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.141 0.859 27 H 0.120 0.880 28 H 0.170 0.830 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.053 0.947 33 H -0.002 1.002 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 23.091 8.855 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.046 4.046 3 C -0.169 4.169 4 C 0.063 3.937 5 F -0.125 7.125 6 C -0.186 4.186 7 C -0.119 4.119 8 C -0.088 4.088 9 C -0.539 4.539 10 S 1.478 4.522 11 O -0.904 6.904 12 C -0.556 4.556 13 C -0.041 4.041 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.191 4.191 17 N -0.589 5.589 18 Si 0.759 3.241 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.155 1.155 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.109 0.891 25 H 0.182 0.818 26 H 0.159 0.841 27 H 0.138 0.862 28 H 0.188 0.812 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.016 0.984 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.987 23.424 7.913 25.043 hybrid contribution 1.948 -2.108 0.486 2.911 sum 5.934 21.315 8.399 23.666 Atomic orbital electron populations 1.21179 0.87229 1.05631 1.04839 1.19982 0.98547 0.90193 0.95859 1.21320 0.91482 1.00527 1.03606 1.17909 0.91111 0.80872 1.03847 1.91475 1.80608 1.46361 1.94093 1.21203 1.01511 0.91198 1.04732 1.21052 0.94459 0.97843 0.98528 1.19228 0.92947 0.93917 1.02721 1.26691 1.08520 0.99334 1.19392 1.69696 0.97336 0.98656 0.86476 1.92999 1.46523 1.84477 1.66371 1.27498 1.10402 1.14212 1.03501 1.19211 0.95693 0.96005 0.93169 1.21417 1.35537 1.06302 0.93589 0.94337 1.25972 0.94330 0.94833 1.03918 1.70041 1.40429 1.16518 1.31874 0.85865 0.77908 0.81358 0.78965 1.20653 1.20007 1.15489 0.88523 0.88671 0.89053 0.81844 0.84078 0.86178 0.81238 0.89069 0.92303 0.83978 0.92846 0.98353 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.19 71.24 0.65 -0.46 16 2 C -0.04 -0.71 5.88 -19.87 -0.12 -0.83 16 3 C -0.15 -2.51 9.68 22.31 0.22 -2.30 16 4 C 0.08 1.73 7.30 22.38 0.16 1.89 16 5 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 6 C -0.17 -3.74 10.03 22.31 0.22 -3.52 16 7 C -0.10 -2.40 9.70 22.26 0.22 -2.18 16 8 C -0.09 -1.82 5.14 -19.86 -0.10 -1.92 16 9 C -0.40 -7.94 5.31 71.24 0.38 -7.56 16 10 S 1.28 34.52 12.78 -56.49 -0.72 33.80 16 11 O -0.91 -37.17 18.14 -148.98 -2.70 -39.87 16 12 C -0.42 -14.51 5.86 71.98 0.42 -14.09 16 13 C 0.00 -0.11 4.05 29.85 0.12 0.01 16 14 C -0.53 -30.17 9.66 25.60 0.25 -29.92 16 15 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 16 C 0.01 0.40 5.47 84.65 0.46 0.86 16 17 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 18 Si 0.94 43.90 27.47 68.60 1.88 45.78 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.23 -9.69 6.54 99.48 0.65 -9.03 16 22 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.09 0.48 8.09 -2.38 -0.02 0.47 16 24 H 0.09 0.59 6.37 -2.39 -0.02 0.57 16 25 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 26 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.17 1.94 6.70 -2.39 -0.02 1.93 16 29 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.05 2.17 7.20 -2.39 -0.02 2.15 16 33 H 0.00 -0.09 7.57 -2.39 -0.02 -0.11 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.04 306.53 3.46 -76.58 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.04 Total: 4.99 kcal Atomic # 6 Polarization: -62.90 SS G_CDS: 2.89 Total: -60.01 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.30 Total: -58.84 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -2.70 Total: -39.87 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: 34.52 SS G_CDS: -0.72 Total: 33.80 kcal Total: -80.04 3.46 -76.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190853134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.257 kcal (2) G-P(sol) polarization free energy of solvation -80.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds