Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.46922 * 270.02438 * 7 6 5 9 9 C 1.81406 * 102.99810 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46952 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.46684 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00756 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99749 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00086 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00052 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47115 * 60.00499 * 15 13 11 17 17 H 1.48502 * 109.47213 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47387 * 300.00077 * 15 13 11 19 19 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 20 20 C 1.38326 * 120.03416 * 359.95854 * 19 6 5 21 21 F 1.35098 * 120.05006 * 179.97438 * 20 19 6 22 22 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 24 24 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 25 25 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 26 26 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 27 27 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 28 28 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 29 29 H 1.09000 * 109.46568 * 299.99415 * 9 8 7 30 30 H 1.08998 * 109.47074 * 59.99487 * 9 8 7 31 31 H 1.08995 * 109.47057 * 299.99640 * 10 9 8 32 32 H 1.09001 * 109.46905 * 60.00114 * 10 9 8 33 33 H 0.96998 * 120.00158 * 180.02562 * 14 13 11 34 34 H 1.08004 * 119.98065 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 16 4.2596 5.5524 -1.7296 9 6 5.0768 7.1599 -1.5321 10 6 5.3810 7.7501 -2.9105 11 6 6.0593 9.0857 -2.7463 12 1 6.2537 9.4749 -1.7579 13 6 6.4319 9.8109 -3.8582 14 7 6.1948 9.3373 -5.0621 15 14 7.2721 11.4669 -3.6549 16 1 8.5392 11.2898 -2.9011 17 1 7.5685 12.0392 -4.9927 18 1 6.3771 12.3879 -2.9092 19 6 4.0580 2.5196 -0.0058 20 6 3.4334 1.2855 -0.0001 21 9 4.1713 0.1538 0.0047 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2138 2.3201 -0.0063 26 1 1.3344 4.5114 -0.0166 27 1 3.3564 5.7503 0.4934 28 1 4.9431 4.9440 0.4974 29 1 4.4208 7.8359 -0.9836 30 1 6.0074 7.0289 -0.9798 31 1 6.0371 7.0739 -3.4585 32 1 4.4506 7.8810 -3.4630 33 1 6.4572 9.8473 -5.8443 34 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190874723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = -74.987937 kcal Electronic energy + Delta-G solvation = -17091.690212 eV Core-core repulsion = 14030.164142 eV Total energy + Delta-G solvation = -3061.526070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.86479 -40.23738 -37.95180 -33.69333 -32.20168 -30.92097 -30.87246 -28.27765 -26.36359 -25.17499 -22.97120 -21.90500 -20.92481 -18.53907 -17.13248 -16.94234 -16.51922 -16.37685 -15.58378 -15.20713 -15.00707 -14.59111 -14.50865 -14.42831 -13.98454 -13.55505 -13.31656 -12.58544 -12.49285 -12.31512 -12.15010 -11.75476 -11.55416 -11.34738 -11.18903 -11.01910 -10.62069 -10.20270 -9.66742 -9.62902 -9.09751 -9.07566 -8.42872 -8.23206 -7.17728 -6.06779 -4.11707 0.88665 0.96275 2.24360 2.86748 3.18393 3.29593 3.34513 3.36732 3.49012 4.03097 4.40797 4.44049 4.50714 4.69322 4.81784 4.92480 5.05167 5.12383 5.21539 5.28577 5.31127 5.56492 5.69848 5.88248 5.93577 5.97499 6.16037 6.30938 6.41626 6.71231 7.02001 7.55294 7.64098 7.89224 8.26254 8.93166 9.52201 11.03939 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046733 B = 0.002924 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.002486 B = 9574.818385 C = 9718.598141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.092 3.908 4 C -0.181 4.181 5 C -0.072 4.072 6 C -0.068 4.068 7 C -0.052 4.052 8 S -0.275 6.275 9 C -0.061 4.061 10 C 0.038 3.962 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.099 4.099 20 C 0.070 3.930 21 F -0.133 7.133 22 H 0.101 0.899 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -15.643 12.581 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.045 3.955 4 C -0.199 4.199 5 C -0.092 4.092 6 C -0.070 4.070 7 C -0.199 4.199 8 S -0.045 6.045 9 C -0.209 4.209 10 C -0.001 4.001 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.120 4.120 20 C 0.050 3.950 21 F -0.112 7.112 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.156 0.844 26 H 0.154 0.846 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.343 -16.346 11.450 22.956 hybrid contribution 0.659 1.501 1.089 1.968 sum -10.684 -14.846 12.539 22.176 Atomic orbital electron populations 1.23111 0.77978 1.04188 1.01584 1.86123 1.21692 1.25892 1.88799 1.19000 0.90797 0.85602 1.00081 1.21090 1.00255 0.91281 1.07310 1.20927 0.93713 0.97558 0.96982 1.19056 0.93255 0.93247 1.01436 1.22195 1.03111 0.95872 0.98712 1.87234 1.80019 1.28502 1.08778 1.23723 1.00136 0.91351 1.05704 1.18894 0.97689 0.95276 0.88206 1.21057 1.39345 1.03111 0.92735 0.92501 1.25017 0.95850 0.98193 0.95191 1.69961 1.46876 1.38464 0.97605 0.86579 0.79971 0.83714 0.77279 1.20143 1.21157 1.20149 1.20910 1.01305 0.89520 1.00239 1.16870 0.85875 0.82903 1.09386 1.91496 1.76424 1.48920 1.94334 0.88030 0.92461 0.92307 0.84370 0.84634 0.89278 0.89366 0.91336 0.91323 0.95524 0.95553 0.92694 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.50 10.36 -19.58 -0.20 -3.70 16 3 C 0.09 1.10 6.69 -39.17 -0.26 0.83 16 4 C -0.18 -1.82 9.04 -39.45 -0.36 -2.18 16 5 C -0.07 -0.78 9.69 -39.60 -0.38 -1.17 16 6 C -0.07 -0.85 5.14 -104.61 -0.54 -1.38 16 7 C -0.05 -0.68 6.07 36.01 0.22 -0.46 16 8 S -0.28 -4.97 21.72 -107.50 -2.33 -7.31 16 9 C -0.06 -1.26 5.88 37.16 0.22 -1.04 16 10 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 11 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 15 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.10 -1.24 9.67 -39.54 -0.38 -1.62 16 20 C 0.07 0.91 7.31 -39.30 -0.29 0.62 16 21 F -0.13 -1.87 17.11 2.25 0.04 -1.83 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 24 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 25 H 0.14 1.00 6.30 -52.48 -0.33 0.67 16 26 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 28 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.15 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -31.36 312.86 -7.87 -39.23 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.47 Total: -3.85 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.33 Total: -17.64 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.33 Total: -7.31 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.36 -7.87 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190874723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.760 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds