Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.46922 * 270.02438 * 7 6 5 9 9 C 1.81406 * 102.99810 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46952 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.46684 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00756 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99749 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00086 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00052 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47115 * 60.00499 * 15 13 11 17 17 H 1.48502 * 109.47213 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47387 * 300.00077 * 15 13 11 19 19 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 20 20 C 1.38326 * 120.03416 * 359.95854 * 19 6 5 21 21 F 1.35098 * 120.05006 * 179.97438 * 20 19 6 22 22 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 24 24 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 25 25 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 26 26 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 27 27 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 28 28 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 29 29 H 1.09000 * 109.46568 * 299.99415 * 9 8 7 30 30 H 1.08998 * 109.47074 * 59.99487 * 9 8 7 31 31 H 1.08995 * 109.47057 * 299.99640 * 10 9 8 32 32 H 1.09001 * 109.46905 * 60.00114 * 10 9 8 33 33 H 0.96998 * 120.00158 * 180.02562 * 14 13 11 34 34 H 1.08004 * 119.98065 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 16 4.2596 5.5524 -1.7296 9 6 5.0768 7.1599 -1.5321 10 6 5.3810 7.7501 -2.9105 11 6 6.0593 9.0857 -2.7463 12 1 6.2537 9.4749 -1.7579 13 6 6.4319 9.8109 -3.8582 14 7 6.1948 9.3373 -5.0621 15 14 7.2721 11.4669 -3.6549 16 1 8.5392 11.2898 -2.9011 17 1 7.5685 12.0392 -4.9927 18 1 6.3771 12.3879 -2.9092 19 6 4.0580 2.5196 -0.0058 20 6 3.4334 1.2855 -0.0001 21 9 4.1713 0.1538 0.0047 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2138 2.3201 -0.0063 26 1 1.3344 4.5114 -0.0166 27 1 3.3564 5.7503 0.4934 28 1 4.9431 4.9440 0.4974 29 1 4.4208 7.8359 -0.9836 30 1 6.0074 7.0289 -0.9798 31 1 6.0371 7.0739 -3.4585 32 1 4.4506 7.8810 -3.4630 33 1 6.4572 9.8473 -5.8443 34 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190874723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = -92.229582 kcal Electronic energy + Delta-G solvation = -17092.437866 eV Core-core repulsion = 14030.164142 eV Total energy + Delta-G solvation = -3062.273724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87187 -41.06087 -38.78792 -35.75926 -33.12502 -32.88359 -31.78740 -28.98109 -27.50805 -26.90834 -23.83610 -23.33407 -22.36463 -19.34900 -18.65782 -18.01017 -17.91139 -17.23185 -16.91368 -16.50615 -16.07335 -15.83937 -15.68109 -15.41754 -15.21962 -15.01814 -14.49351 -14.09740 -13.57854 -13.40243 -13.17764 -13.14127 -12.87010 -12.69910 -12.43647 -12.15545 -12.09732 -12.04404 -11.66288 -11.26437 -10.80046 -10.59272 -9.98902 -9.15776 -8.61302 -8.22097 -6.35903 -0.09334 0.07844 0.99918 1.41967 1.45052 1.53186 1.78849 2.16144 2.41279 2.58474 3.11046 3.14040 3.54542 3.67542 3.93229 4.16770 4.26739 4.30460 4.36830 4.39667 4.41312 4.45738 4.61190 4.72957 4.83338 4.90936 4.99896 5.09410 5.39696 5.40692 5.51597 5.56973 5.75000 6.12050 6.24765 6.78861 7.33704 8.89407 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046733 B = 0.002924 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.002486 B = 9574.818385 C = 9718.598141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.092 3.908 4 C -0.174 4.174 5 C -0.067 4.067 6 C -0.085 4.085 7 C -0.031 4.031 8 S -0.313 6.313 9 C -0.050 4.050 10 C 0.044 3.956 11 C -0.542 4.542 12 H 0.069 0.931 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.263 1.263 19 C -0.102 4.102 20 C 0.040 3.960 21 F -0.146 7.146 22 H 0.120 0.880 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.171 0.829 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.076 0.924 31 H -0.006 1.006 32 H -0.004 1.004 33 H 0.265 0.735 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -15.149 14.353 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.044 3.956 4 C -0.193 4.193 5 C -0.087 4.087 6 C -0.087 4.087 7 C -0.178 4.178 8 S -0.083 6.083 9 C -0.198 4.198 10 C 0.006 3.994 11 C -0.582 4.582 12 H 0.087 0.913 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.795 3.205 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.122 4.122 20 C 0.020 3.980 21 F -0.125 7.125 22 H 0.138 0.862 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.188 0.812 26 H 0.174 0.826 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.012 0.988 32 H 0.014 0.986 33 H 0.074 0.926 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.528 -15.851 13.235 24.153 hybrid contribution 0.896 1.176 0.573 1.586 sum -11.631 -14.675 13.808 23.266 Atomic orbital electron populations 1.23467 0.75518 1.06000 1.02899 1.86108 1.24295 1.25798 1.88533 1.19193 0.90569 0.86604 0.99189 1.21411 1.01762 0.90170 1.05938 1.21237 0.93267 0.98737 0.95409 1.19051 0.94012 0.92503 1.03103 1.22220 1.04443 0.96610 0.94486 1.87315 1.79728 1.26964 1.14332 1.23336 1.01198 0.93001 1.02230 1.18668 0.95301 0.94714 0.90746 1.21542 1.39262 1.04011 0.93377 0.91318 1.26040 0.96500 1.02524 0.94747 1.70113 1.48211 1.40327 0.98595 0.85405 0.79129 0.78525 0.77413 1.18987 1.20981 1.18816 1.20995 1.01650 0.89613 0.99980 1.17163 0.86768 0.82763 1.11310 1.91452 1.76847 1.49545 1.94644 0.86208 0.90723 0.91261 0.81161 0.82624 0.87156 0.88160 0.90143 0.90510 0.98809 0.98576 0.92596 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.99 10.36 -92.97 -0.96 -7.95 16 3 C 0.09 2.05 6.69 22.53 0.15 2.20 16 4 C -0.17 -3.03 9.04 22.36 0.20 -2.83 16 5 C -0.07 -1.27 9.69 22.26 0.22 -1.05 16 6 C -0.08 -1.95 5.14 -19.85 -0.10 -2.05 16 7 C -0.03 -0.74 6.07 71.24 0.43 -0.31 16 8 S -0.31 -11.19 21.72 -56.49 -1.23 -12.42 16 9 C -0.05 -2.03 5.88 71.98 0.42 -1.61 16 10 C 0.04 2.35 4.98 29.85 0.15 2.50 16 11 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 12 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 15 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 C -0.10 -2.48 9.67 22.29 0.22 -2.26 16 20 C 0.04 1.03 7.31 22.45 0.16 1.19 16 21 F -0.15 -4.19 17.11 44.97 0.77 -3.42 16 22 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.51 7.67 -2.39 -0.02 0.50 16 24 H 0.07 0.57 7.65 -2.39 -0.02 0.56 16 25 H 0.17 1.77 6.30 -2.91 -0.02 1.76 16 26 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 27 H 0.11 2.23 8.08 -2.39 -0.02 2.21 16 28 H 0.10 2.20 8.08 -2.39 -0.02 2.18 16 29 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -69.41 312.86 5.64 -63.77 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.09 Total: 3.93 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.66 Total: -32.67 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.28 Total: -56.80 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.96 Total: -7.95 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.77 Total: -3.42 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -11.19 SS G_CDS: -1.23 Total: -12.42 kcal Total: -69.41 5.64 -63.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190874723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.463 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds