Wall clock time and date at job start Mon Mar 30 2020 00:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99620 * 2 1 4 4 H 1.48490 * 109.47378 * 270.00484 * 3 2 1 5 5 H 1.48503 * 109.46855 * 30.00623 * 3 2 1 6 6 H 1.48498 * 109.46698 * 150.00230 * 3 2 1 7 7 C 1.37877 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99634 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46954 * 179.97438 * 9 7 2 11 11 S 1.81405 * 109.47189 * 179.97438 * 10 9 7 12 12 C 1.81396 * 103.00203 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47360 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.35897 * 117.00481 * 180.02562 * 14 13 12 16 16 C 1.38774 * 120.03441 * 359.72088 * 15 14 13 17 17 C 1.38138 * 119.99122 * 179.74971 * 16 15 14 18 18 C 1.38257 * 120.07872 * 0.53010 * 17 16 15 19 19 C 1.38476 * 120.08328 * 359.74048 * 18 17 16 20 20 F 1.35105 * 119.99874 * 179.97438 * 19 18 17 21 21 C 1.38392 * 120.00736 * 359.97438 * 19 18 17 22 22 H 0.96996 * 120.00757 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47382 * 59.99647 * 9 7 2 24 24 H 1.09004 * 109.47112 * 299.99702 * 9 7 2 25 25 H 1.09001 * 109.47046 * 60.00198 * 10 9 7 26 26 H 1.08992 * 109.47704 * 299.99890 * 10 9 7 27 27 H 1.09002 * 109.47134 * 59.99960 * 12 11 10 28 28 H 1.08998 * 109.46953 * 300.00697 * 12 11 10 29 29 H 1.09002 * 109.47153 * 59.99820 * 13 12 11 30 30 H 1.09001 * 109.46832 * 300.00011 * 13 12 11 31 31 H 1.07996 * 120.00577 * 0.02562 * 16 15 14 32 32 H 1.07993 * 119.96226 * 180.27412 * 17 16 15 33 33 H 1.07999 * 119.95967 * 179.77480 * 18 17 16 34 34 H 1.07997 * 120.03638 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0018 11 16 1.3386 -5.2330 -0.0011 12 6 2.6653 -6.4701 -0.0019 13 6 2.0546 -7.8729 -0.0020 14 8 3.0997 -8.8474 -0.0021 15 6 2.7253 -10.1538 -0.0028 16 6 1.3791 -10.4905 0.0025 17 6 0.9994 -11.8187 -0.0033 18 6 1.9593 -12.8137 -0.0035 19 6 3.3036 -12.4814 -0.0031 20 9 4.2402 -13.4551 -0.0027 21 6 3.6879 -11.1519 -0.0032 22 1 -0.4851 0.8399 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6249 -2.5571 0.8897 25 1 2.8728 -3.6046 0.8877 26 1 2.8714 -3.6039 -0.8922 27 1 3.2821 -6.3420 0.8876 28 1 3.2808 -6.3420 -0.8923 29 1 1.4380 -8.0007 -0.8918 30 1 1.4388 -8.0011 0.8882 31 1 0.6282 -9.7143 0.0068 32 1 -0.0484 -12.0802 -0.0037 33 1 1.6604 -13.8515 -0.0044 34 1 4.7361 -10.8921 -0.0033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190901634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:31 Heat of formation + Delta-G solvation = -75.980481 kcal Electronic energy + Delta-G solvation = -16657.374495 eV Core-core repulsion = 13595.805385 eV Total energy + Delta-G solvation = -3061.569110 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.23639 -40.39004 -37.64012 -33.74917 -32.32789 -30.94186 -30.86266 -29.79522 -25.46221 -24.32013 -23.19663 -22.05680 -20.95696 -18.95609 -16.91935 -16.58036 -16.54648 -16.53858 -16.41056 -15.84069 -15.32893 -14.81565 -14.53617 -14.16123 -14.10427 -13.42090 -13.32581 -12.97691 -12.61562 -12.20843 -12.08304 -11.94980 -11.57030 -11.27719 -11.10568 -11.01055 -10.64312 -10.26067 -9.74819 -9.64794 -9.24205 -9.15366 -8.64022 -8.46795 -7.30687 -6.10727 -4.15655 0.77542 0.94107 1.72730 3.02288 3.07042 3.24137 3.26508 3.33107 3.36131 4.02357 4.35907 4.38126 4.62691 4.64682 4.69407 4.71987 4.95549 5.02485 5.14863 5.25039 5.49163 5.58599 5.67157 5.72366 5.87271 5.90572 5.97678 6.09276 6.36199 6.63447 7.01695 7.50074 7.57719 7.84901 8.21473 8.89194 9.48621 11.00045 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.068209 B = 0.002392 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.404977 B =11701.707275 C =12081.061899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.055 4.055 11 S -0.271 6.271 12 C -0.098 4.098 13 C 0.079 3.921 14 O -0.309 6.309 15 C 0.166 3.834 16 C -0.219 4.219 17 C -0.049 4.049 18 C -0.196 4.196 19 C 0.137 3.863 20 F -0.136 7.136 21 C -0.193 4.193 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -23.600 -0.006 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.202 4.202 11 S -0.044 6.044 12 C -0.246 4.246 13 C 0.003 3.997 14 O -0.223 6.223 15 C 0.119 3.881 16 C -0.238 4.238 17 C -0.067 4.067 18 C -0.215 4.215 19 C 0.117 3.883 20 F -0.114 7.114 21 C -0.212 4.212 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.670 -23.610 0.000 23.761 hybrid contribution 1.723 0.983 -0.012 1.984 sum 4.393 -22.627 -0.012 23.050 Atomic orbital electron populations 1.69962 1.06084 1.26967 1.49852 1.25015 0.94914 0.99356 0.94969 0.86503 0.79756 0.83013 0.78210 1.20516 1.21067 1.19795 1.21071 0.93031 0.90149 1.51980 0.92385 1.18921 0.93409 0.89167 0.98657 1.23746 1.01414 0.91554 1.03515 1.86839 1.15964 1.03396 1.98168 1.23148 1.01019 0.94241 1.06155 1.22542 0.88825 0.85405 1.02914 1.86059 1.36202 1.12233 1.87790 1.18613 0.92213 0.83704 0.93532 1.21444 0.94976 0.98198 1.09143 1.20816 0.99636 0.91403 0.94858 1.21051 0.90987 1.01116 1.08344 1.17281 0.85998 0.84532 1.00439 1.91517 1.64734 1.61480 1.93685 1.20262 1.00683 0.89719 1.10576 0.92713 0.95439 0.95423 0.91068 0.91064 0.89331 0.89337 0.90660 0.90670 0.84400 0.84541 0.84636 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 10 C -0.05 -1.10 5.88 37.16 0.22 -0.88 16 11 S -0.27 -4.66 21.74 -107.50 -2.34 -7.00 16 12 C -0.10 -1.28 6.31 37.16 0.23 -1.05 16 13 C 0.08 0.89 4.75 37.16 0.18 1.07 16 14 O -0.31 -3.66 10.14 -19.42 -0.20 -3.86 16 15 C 0.17 1.79 6.68 -39.23 -0.26 1.53 16 16 C -0.22 -2.01 9.04 -39.42 -0.36 -2.36 16 17 C -0.05 -0.38 10.04 -39.61 -0.40 -0.78 16 18 C -0.20 -1.61 10.02 -39.49 -0.40 -2.01 16 19 C 0.14 1.34 7.30 -39.44 -0.29 1.05 16 20 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 21 C -0.19 -1.99 9.97 -39.37 -0.39 -2.38 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 0.79 7.67 -51.93 -0.40 0.40 16 30 H 0.08 0.79 7.65 -51.93 -0.40 0.40 16 31 H 0.14 1.11 6.30 -52.49 -0.33 0.78 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -29.40 313.51 -8.54 -37.94 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.47 Total: -2.96 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.01 Total: -18.09 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.20 Total: -3.86 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -2.34 Total: -7.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.40 -8.54 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190901634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.043 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds