Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48494 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47175 * 300.00423 * 3 2 1 6 6 H 1.48505 * 109.46864 * 59.99924 * 3 2 1 7 7 C 1.37878 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46931 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47212 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99931 * 180.02562 * 12 11 10 14 14 O 1.21548 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.47885 * 119.99722 * 179.97438 * 13 12 11 16 16 N 1.32844 * 119.72512 * 0.02562 * 15 13 12 17 17 C 1.31364 * 121.69359 * 179.97438 * 16 15 13 18 18 C 1.39005 * 120.92975 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.32660 * 180.02562 * 18 17 16 20 20 C 1.38720 * 119.34296 * 0.02562 * 18 17 16 21 21 C 1.38834 * 118.45065 * 359.97438 * 20 18 17 22 22 F 1.35098 * 120.48765 * 179.97438 * 21 20 18 23 23 H 0.97004 * 119.99690 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46807 * 59.99634 * 9 7 2 25 25 H 1.09001 * 109.46927 * 300.00057 * 9 7 2 26 26 H 1.09006 * 109.47383 * 60.00220 * 10 9 7 27 27 H 1.09001 * 109.47451 * 299.99968 * 10 9 7 28 28 H 1.09001 * 109.46795 * 60.00441 * 11 10 9 29 29 H 1.08996 * 109.47066 * 299.99805 * 11 10 9 30 30 H 0.97003 * 119.99691 * 359.97438 * 12 11 10 31 31 H 1.07998 * 119.53622 * 180.27942 * 17 16 15 32 32 H 1.08002 * 120.77126 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7877 -7.5934 -0.0010 15 6 2.9437 -8.4954 -0.0031 16 7 4.2486 -8.2464 -0.0035 17 6 5.1360 -9.2150 -0.0041 18 6 4.7395 -10.5473 -0.0037 19 9 5.6626 -11.5337 -0.0038 20 6 3.3866 -10.8539 -0.0033 21 6 2.4717 -9.8096 -0.0027 22 9 1.1444 -10.0611 -0.0027 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8711 -3.6040 -0.8923 28 1 0.8525 -5.0446 -0.8905 29 1 0.8544 -5.0449 0.8895 30 1 3.3857 -5.9235 -0.0029 31 1 6.1885 -8.9728 0.0001 32 1 3.0528 -11.8810 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192278023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = -101.644343 kcal Electronic energy + Delta-G solvation = -19215.734473 eV Core-core repulsion = 15619.132069 eV Total energy + Delta-G solvation = -3596.602403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.69587 -49.38302 -40.77596 -39.02449 -35.50595 -33.49206 -32.92321 -31.68942 -30.86596 -26.98338 -25.20691 -24.30028 -22.97365 -20.96099 -20.48279 -18.74979 -18.61896 -18.01552 -16.80984 -16.48836 -16.29960 -15.92122 -15.75634 -15.28057 -15.22682 -14.83721 -14.43309 -14.10968 -13.86386 -13.65837 -13.30454 -12.94098 -12.29818 -11.85266 -11.75841 -10.92355 -10.82230 -10.67088 -10.58343 -10.45021 -10.10727 -9.87715 -9.49212 -9.43439 -9.11200 -8.83846 -8.37435 -6.01896 -4.04814 -0.15820 0.28086 2.32004 2.87863 3.17971 3.26844 3.30372 3.37960 3.41616 3.46957 3.62922 3.97693 4.19554 4.44593 4.53228 4.87175 5.06921 5.15399 5.34137 5.67276 5.74819 5.86037 6.13645 6.38293 6.58132 6.77383 6.91697 6.98396 7.59317 7.63723 7.75672 7.96947 8.17589 8.38245 9.02092 9.59499 11.09463 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037463 B = 0.003040 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.219970 B = 9208.611317 C = 9930.082579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.114 3.886 12 N -0.699 5.699 13 C 0.561 3.439 14 O -0.522 6.522 15 C 0.042 3.958 16 N -0.400 5.400 17 C 0.067 3.933 18 C 0.101 3.899 19 F -0.116 7.116 20 C -0.158 4.158 21 C 0.143 3.857 22 F -0.094 7.094 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.409 0.591 31 H 0.185 0.815 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.731 -22.873 -0.008 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.349 5.349 13 C 0.344 3.656 14 O -0.398 6.398 15 C -0.098 4.098 16 N -0.110 5.110 17 C -0.096 4.096 18 C 0.079 3.921 19 F -0.094 7.094 20 C -0.185 4.185 21 C 0.120 3.880 22 F -0.072 7.072 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.201 0.799 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.913 -22.024 -0.006 24.152 hybrid contribution 0.615 -0.191 -0.001 0.644 sum 10.529 -22.215 -0.007 24.583 Atomic orbital electron populations 1.69977 1.06064 1.26580 1.50676 1.25033 0.94858 0.99327 0.95287 0.86524 0.80071 0.83740 0.77585 1.19728 1.21013 1.21018 1.21244 0.93066 0.90897 1.50775 0.92536 1.19039 0.93840 0.90829 0.97712 1.21904 0.99808 0.93049 1.01149 1.21789 0.91800 0.84830 1.02394 1.46050 1.11852 1.04985 1.72057 1.17524 0.86881 0.82695 0.78516 1.90880 1.14809 1.84317 1.49809 1.21705 0.91531 0.92643 1.03886 1.67732 1.00391 1.35160 1.07754 1.23104 1.01170 0.86096 0.99196 1.18763 0.86079 0.86742 1.00538 1.91590 1.64388 1.60308 1.93149 1.21695 0.91308 1.01571 1.03940 1.18329 0.79408 0.92379 0.97929 1.91679 1.28808 1.94434 1.92239 0.92982 0.96217 0.96210 0.92537 0.92529 0.91290 0.91294 0.75495 0.79856 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 11 C 0.11 2.00 5.67 -4.04 -0.02 1.97 16 12 N -0.70 -10.48 5.54 -61.23 -0.34 -10.82 16 13 C 0.56 8.72 7.80 -12.31 -0.10 8.62 16 14 O -0.52 -9.82 15.31 5.32 0.08 -9.74 16 15 C 0.04 0.51 6.75 -82.96 -0.56 -0.05 16 16 N -0.40 -4.10 9.53 -9.70 -0.09 -4.19 16 17 C 0.07 0.48 11.17 -17.47 -0.20 0.29 16 18 C 0.10 0.71 7.35 -39.12 -0.29 0.42 16 19 F -0.12 -0.78 17.28 2.25 0.04 -0.74 16 20 C -0.16 -1.19 10.14 -39.18 -0.40 -1.59 16 21 C 0.14 1.55 7.31 -38.84 -0.28 1.27 16 22 F -0.09 -1.21 15.54 2.25 0.04 -1.18 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.41 5.32 7.80 -40.82 -0.32 5.00 16 31 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -32.06 297.18 -5.86 -37.92 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.24 Total: -1.70 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.53 Total: -4.42 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.30 Total: -41.04 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.07 Total: -1.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.06 -5.86 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192278023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.723 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds