Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48494 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47175 * 300.00423 * 3 2 1 6 6 H 1.48505 * 109.46864 * 59.99924 * 3 2 1 7 7 C 1.37878 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46931 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47212 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99931 * 180.02562 * 12 11 10 14 14 O 1.21548 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.47885 * 119.99722 * 179.97438 * 13 12 11 16 16 N 1.32844 * 119.72512 * 0.02562 * 15 13 12 17 17 C 1.31364 * 121.69359 * 179.97438 * 16 15 13 18 18 C 1.39005 * 120.92975 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.32660 * 180.02562 * 18 17 16 20 20 C 1.38720 * 119.34296 * 0.02562 * 18 17 16 21 21 C 1.38834 * 118.45065 * 359.97438 * 20 18 17 22 22 F 1.35098 * 120.48765 * 179.97438 * 21 20 18 23 23 H 0.97004 * 119.99690 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46807 * 59.99634 * 9 7 2 25 25 H 1.09001 * 109.46927 * 300.00057 * 9 7 2 26 26 H 1.09006 * 109.47383 * 60.00220 * 10 9 7 27 27 H 1.09001 * 109.47451 * 299.99968 * 10 9 7 28 28 H 1.09001 * 109.46795 * 60.00441 * 11 10 9 29 29 H 1.08996 * 109.47066 * 299.99805 * 11 10 9 30 30 H 0.97003 * 119.99691 * 359.97438 * 12 11 10 31 31 H 1.07998 * 119.53622 * 180.27942 * 17 16 15 32 32 H 1.08002 * 120.77126 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7877 -7.5934 -0.0010 15 6 2.9437 -8.4954 -0.0031 16 7 4.2486 -8.2464 -0.0035 17 6 5.1360 -9.2150 -0.0041 18 6 4.7395 -10.5473 -0.0037 19 9 5.6626 -11.5337 -0.0038 20 6 3.3866 -10.8539 -0.0033 21 6 2.4717 -9.8096 -0.0027 22 9 1.1444 -10.0611 -0.0027 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8711 -3.6040 -0.8923 28 1 0.8525 -5.0446 -0.8905 29 1 0.8544 -5.0449 0.8895 30 1 3.3857 -5.9235 -0.0029 31 1 6.1885 -8.9728 0.0001 32 1 3.0528 -11.8810 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192278023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = -123.492263 kcal Electronic energy + Delta-G solvation = -19216.681870 eV Core-core repulsion = 15619.132069 eV Total energy + Delta-G solvation = -3597.549800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.27991 -50.24884 -41.65150 -40.13856 -37.04641 -35.25975 -33.83784 -33.03949 -32.05099 -28.71570 -26.23991 -25.25034 -24.43329 -22.34011 -21.97411 -19.54725 -19.39922 -19.02584 -18.43350 -17.57756 -17.13240 -16.96564 -16.77181 -16.49561 -16.45061 -16.14725 -15.55842 -15.48362 -14.91047 -14.47759 -14.25886 -14.24413 -13.76024 -13.70294 -13.51021 -12.77568 -12.56157 -12.35463 -11.77871 -11.68662 -11.45948 -11.22396 -11.11367 -10.97488 -10.55125 -10.37086 -10.06110 -8.18728 -6.29926 -0.93445 -0.36632 1.38375 1.42855 1.42934 1.56329 1.83997 2.33974 2.42045 2.44903 2.72664 2.83987 3.15301 3.37169 3.42321 3.80535 4.10777 4.19724 4.20089 4.34611 4.54225 4.59230 4.92894 4.93066 5.16765 5.21392 5.32254 5.52908 5.71365 5.85186 6.12502 6.23631 6.45547 6.87641 6.99781 7.39665 8.93638 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037463 B = 0.003040 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.219970 B = 9208.611317 C = 9930.082579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.691 5.691 13 C 0.559 3.441 14 O -0.565 6.565 15 C 0.019 3.981 16 N -0.412 5.412 17 C 0.080 3.920 18 C 0.120 3.880 19 F -0.107 7.107 20 C -0.142 4.142 21 C 0.127 3.873 22 F -0.113 7.113 23 H 0.263 0.737 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.421 0.579 31 H 0.221 0.779 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 -23.914 -0.009 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.342 5.342 13 C 0.344 3.656 14 O -0.443 6.443 15 C -0.118 4.118 16 N -0.122 5.122 17 C -0.083 4.083 18 C 0.097 3.903 19 F -0.085 7.085 20 C -0.169 4.169 21 C 0.104 3.896 22 F -0.091 7.091 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.259 0.741 31 H 0.238 0.762 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 13.094 -23.075 -0.007 26.531 hybrid contribution -0.267 0.007 0.000 0.267 sum 12.827 -23.068 -0.008 26.395 Atomic orbital electron populations 1.70119 1.07936 1.27719 1.51802 1.26023 0.95750 1.03556 0.94812 0.85360 0.79235 0.78622 0.77589 1.18155 1.20605 1.20615 1.21714 0.93781 0.91986 1.50287 0.91515 1.18947 0.94408 0.92839 0.95218 1.21607 0.98494 0.91600 1.02282 1.21394 0.91814 0.85085 1.01346 1.45818 1.11919 1.04411 1.72080 1.18008 0.87061 0.83347 0.77186 1.90847 1.16845 1.85014 1.51631 1.21143 0.91901 0.91731 1.07017 1.67703 0.99646 1.36316 1.08503 1.23699 1.02133 0.85666 0.96839 1.18713 0.85851 0.86830 0.98880 1.91630 1.64013 1.60015 1.92817 1.21899 0.90940 1.01973 1.02086 1.18503 0.79147 0.92769 0.99164 1.91630 1.30318 1.94508 1.92635 0.92825 0.98797 0.98789 0.91295 0.91286 0.92483 0.92487 0.74121 0.76248 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 11 C 0.13 4.57 5.67 86.38 0.49 5.06 16 12 N -0.69 -20.77 5.54 -465.92 -2.58 -23.35 16 13 C 0.56 17.72 7.80 86.80 0.68 18.39 16 14 O -0.56 -22.20 15.31 -3.87 -0.06 -22.26 16 15 C 0.02 0.46 6.75 41.88 0.28 0.75 16 16 N -0.41 -7.57 9.53 -184.60 -1.76 -9.33 16 17 C 0.08 0.87 11.17 84.95 0.95 1.82 16 18 C 0.12 1.23 7.35 22.57 0.17 1.39 16 19 F -0.11 -0.98 17.28 44.97 0.78 -0.20 16 20 C -0.14 -1.76 10.14 22.53 0.23 -1.53 16 21 C 0.13 2.67 7.31 22.75 0.17 2.83 16 22 F -0.11 -2.97 15.54 44.97 0.70 -2.27 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.42 10.54 7.80 -92.71 -0.72 9.82 16 31 H 0.22 0.72 8.06 -2.91 -0.02 0.69 16 32 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -71.30 297.18 3.79 -67.51 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.44 Total: 4.35 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 3.96 Total: -3.38 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -4.06 Total: -89.62 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.48 Total: -2.47 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.30 3.79 -67.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192278023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.981 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds