Wall clock time and date at job start Mon Mar 30 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47288 * 2 1 4 4 N 1.46503 * 109.47472 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99731 * 269.75286 * 4 3 2 6 6 H 1.08000 * 120.00319 * 322.09330 * 5 4 3 7 7 C 1.38819 * 119.99710 * 142.09309 * 5 4 3 8 8 N 1.31618 * 119.99895 * 156.97102 * 7 5 4 9 9 Si 1.86796 * 120.00146 * 336.97465 * 7 5 4 10 10 H 1.48498 * 109.47491 * 95.69991 * 9 7 5 11 11 H 1.48498 * 109.47069 * 215.70363 * 9 7 5 12 12 H 1.48506 * 109.47185 * 335.69990 * 9 7 5 13 13 C 1.46493 * 119.99922 * 89.75034 * 4 3 2 14 14 C 1.50700 * 109.47394 * 90.00348 * 13 4 3 15 15 O 1.21281 * 119.99539 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00259 * 179.97438 * 14 13 4 17 17 C 1.39077 * 120.00096 * 180.02562 * 16 14 13 18 18 N 1.29892 * 125.64953 * 0.02562 * 17 16 14 19 19 N 1.26251 * 117.66071 * 179.97438 * 18 17 16 20 20 C 1.29530 * 116.57648 * 0.02562 * 19 18 17 21 21 S 1.71305 * 125.65558 * 179.72260 * 17 16 14 22 22 H 1.09007 * 109.47598 * 300.00274 * 1 2 3 23 23 H 1.09006 * 109.47149 * 59.99953 * 1 2 3 24 24 H 1.08998 * 109.47610 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47057 * 239.99773 * 2 1 3 26 26 H 1.09001 * 109.46722 * 120.00216 * 2 1 3 27 27 H 1.09007 * 109.47278 * 59.99864 * 3 2 1 28 28 H 1.08999 * 109.47672 * 300.00254 * 3 2 1 29 29 H 0.96992 * 120.00258 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47269 * 330.00069 * 13 4 3 31 31 H 1.09006 * 109.47369 * 210.00439 * 13 4 3 32 32 H 0.96998 * 119.99766 * 0.02562 * 16 14 13 33 33 H 1.07994 * 126.13913 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4478 1.1868 6 1 3.8197 2.0261 2.0208 7 6 5.3576 0.7098 1.3174 8 7 6.2442 1.0378 2.2332 9 14 5.6717 -0.7488 0.1935 10 1 6.5093 -0.3179 -0.9545 11 1 6.3784 -1.8134 0.9499 12 1 4.3768 -1.2747 -0.3086 13 6 4.2380 1.4368 -1.2677 14 6 4.4894 2.8556 -1.7091 15 8 4.0946 3.7805 -1.0310 16 7 5.1528 3.0967 -2.8572 17 6 5.3853 4.4061 -3.2642 18 7 5.0141 5.4746 -2.6256 19 7 5.3063 6.5926 -3.1342 20 6 5.9542 6.5675 -4.2555 21 16 6.2149 4.8772 -4.6870 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 7.0608 0.5224 2.3243 30 1 3.6493 0.9195 -2.0253 31 1 5.1904 0.9235 -1.1348 32 1 5.4682 2.3570 -3.3996 33 1 6.2798 7.4272 -4.8223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194970605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:14 Heat of formation + Delta-G solvation = 68.581771 kcal Electronic energy + Delta-G solvation = -18597.137341 eV Core-core repulsion = 15594.049634 eV Total energy + Delta-G solvation = -3003.087707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08439 -39.24433 -36.30220 -34.72425 -32.97259 -31.44048 -30.46961 -27.92759 -26.02115 -25.68105 -22.80990 -21.97226 -20.25570 -19.66295 -19.27714 -17.48418 -16.95219 -16.40152 -15.91896 -15.36976 -14.78259 -14.40881 -14.15706 -13.93650 -13.56151 -13.25333 -12.86579 -12.63435 -12.53415 -11.90552 -11.29272 -11.17293 -10.91086 -10.82514 -10.65284 -10.54518 -10.31866 -10.13622 -9.93771 -9.69235 -9.67799 -9.29521 -8.64236 -8.60797 -7.03124 -6.11053 -3.52204 0.58511 0.66971 1.26199 2.71174 2.98082 3.09626 3.27829 3.34700 3.39798 4.35378 4.45985 4.74640 4.89494 5.17931 5.40418 5.48933 5.56685 5.66819 5.75057 5.91668 5.96463 6.09692 6.25474 6.33811 6.46449 6.48654 6.82166 7.00912 7.29096 7.88761 8.30820 8.51197 8.81719 8.85246 9.55043 9.91696 11.04009 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.005924 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.113259 B = 4725.250749 C = 5363.863357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.153 3.847 4 N -0.572 5.572 5 C -0.263 4.263 6 H 0.083 0.917 7 C 0.035 3.965 8 N -0.887 5.887 9 Si 0.865 3.135 10 H -0.286 1.286 11 H -0.295 1.295 12 H -0.260 1.260 13 C 0.124 3.876 14 C 0.471 3.529 15 O -0.441 6.441 16 N -0.637 5.637 17 C 0.257 3.743 18 N -0.282 5.282 19 N -0.223 5.223 20 C -0.035 4.035 21 S 0.066 5.934 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.418 0.582 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 1.081 -16.599 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.027 3.973 4 N -0.290 5.290 5 C -0.392 4.392 6 H 0.100 0.900 7 C -0.166 4.166 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.214 1.214 11 H -0.222 1.222 12 H -0.184 1.184 13 C -0.008 4.008 14 C 0.252 3.748 15 O -0.304 6.304 16 N -0.292 5.292 17 C -0.114 4.114 18 N -0.127 5.127 19 N -0.057 5.057 20 C -0.339 4.339 21 S 0.302 5.698 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.255 0.745 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.145 1.773 -15.512 15.760 hybrid contribution 0.799 -1.114 -0.987 1.690 sum -1.346 0.659 -16.499 16.567 Atomic orbital electron populations 1.21721 0.96926 1.00631 1.01218 1.22110 0.94083 1.00233 1.02004 1.20982 0.82718 0.93635 0.99920 1.43852 1.01022 1.83356 1.00761 1.18827 1.06338 1.23883 0.90147 0.89954 1.25521 0.96575 0.97868 0.96673 1.69901 1.08096 1.38818 1.35859 0.87102 0.78328 0.85044 0.80146 1.21449 1.22241 1.18445 1.21557 0.99136 0.89448 0.90656 1.24200 0.76623 0.95723 0.78217 1.90774 1.44539 1.45349 1.49692 1.44390 1.57169 1.01814 1.25834 1.26615 0.97633 0.93013 0.94104 1.71553 1.23226 0.91899 1.26047 1.71393 1.09834 1.17733 1.06736 1.31013 1.05865 0.98015 0.98993 1.84697 1.55579 1.05852 1.23676 0.92907 0.93453 0.93583 0.93215 0.91442 0.92359 0.94229 0.92492 0.90373 0.89599 0.74477 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.49 6.26 -26.74 -0.17 -2.66 16 3 C 0.15 3.02 5.67 -4.04 -0.02 3.00 16 4 N -0.57 -13.23 1.56 -174.61 -0.27 -13.50 16 5 C -0.26 -7.26 9.90 -15.06 -0.15 -7.41 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.04 0.98 5.29 -17.43 -0.09 0.89 16 8 N -0.89 -26.68 13.97 55.49 0.78 -25.91 16 9 Si 0.86 20.15 25.10 -169.99 -4.27 15.89 16 10 H -0.29 -6.22 6.68 56.52 0.38 -5.84 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.12 2.48 5.00 -5.20 -0.03 2.45 16 14 C 0.47 9.66 7.86 -10.99 -0.09 9.58 16 15 O -0.44 -11.17 15.11 5.56 0.08 -11.09 16 16 N -0.64 -10.19 5.41 -12.92 -0.07 -10.26 16 17 C 0.26 4.24 8.14 -87.06 -0.71 3.53 16 18 N -0.28 -5.66 9.74 29.97 0.29 -5.36 16 19 N -0.22 -3.83 11.65 30.52 0.36 -3.48 16 20 C -0.04 -0.42 12.69 51.79 0.66 0.24 16 21 S 0.07 0.73 23.31 -107.50 -2.51 -1.77 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.20 8.04 -51.92 -0.42 0.79 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.31 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.09 1.80 3.38 -51.93 -0.18 1.63 16 32 H 0.42 4.73 8.82 -40.82 -0.36 4.37 16 33 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -35.57 298.96 -5.24 -40.81 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.91 Total: 2.22 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.23 Total: 7.96 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 1.08 Total: -58.50 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.27 Total: 15.89 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.57 -5.24 -40.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194970605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.387 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds