Wall clock time and date at job start Mon Mar 30 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47288 * 2 1 4 4 N 1.46503 * 109.47472 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99731 * 269.75286 * 4 3 2 6 6 H 1.08000 * 120.00319 * 322.09330 * 5 4 3 7 7 C 1.38819 * 119.99710 * 142.09309 * 5 4 3 8 8 N 1.31618 * 119.99895 * 156.97102 * 7 5 4 9 9 Si 1.86796 * 120.00146 * 336.97465 * 7 5 4 10 10 H 1.48498 * 109.47491 * 95.69991 * 9 7 5 11 11 H 1.48498 * 109.47069 * 215.70363 * 9 7 5 12 12 H 1.48506 * 109.47185 * 335.69990 * 9 7 5 13 13 C 1.46493 * 119.99922 * 89.75034 * 4 3 2 14 14 C 1.50700 * 109.47394 * 90.00348 * 13 4 3 15 15 O 1.21281 * 119.99539 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00259 * 179.97438 * 14 13 4 17 17 C 1.39077 * 120.00096 * 180.02562 * 16 14 13 18 18 N 1.29892 * 125.64953 * 0.02562 * 17 16 14 19 19 N 1.26251 * 117.66071 * 179.97438 * 18 17 16 20 20 C 1.29530 * 116.57648 * 0.02562 * 19 18 17 21 21 S 1.71305 * 125.65558 * 179.72260 * 17 16 14 22 22 H 1.09007 * 109.47598 * 300.00274 * 1 2 3 23 23 H 1.09006 * 109.47149 * 59.99953 * 1 2 3 24 24 H 1.08998 * 109.47610 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47057 * 239.99773 * 2 1 3 26 26 H 1.09001 * 109.46722 * 120.00216 * 2 1 3 27 27 H 1.09007 * 109.47278 * 59.99864 * 3 2 1 28 28 H 1.08999 * 109.47672 * 300.00254 * 3 2 1 29 29 H 0.96992 * 120.00258 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47269 * 330.00069 * 13 4 3 31 31 H 1.09006 * 109.47369 * 210.00439 * 13 4 3 32 32 H 0.96998 * 119.99766 * 0.02562 * 16 14 13 33 33 H 1.07994 * 126.13913 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4478 1.1868 6 1 3.8197 2.0261 2.0208 7 6 5.3576 0.7098 1.3174 8 7 6.2442 1.0378 2.2332 9 14 5.6717 -0.7488 0.1935 10 1 6.5093 -0.3179 -0.9545 11 1 6.3784 -1.8134 0.9499 12 1 4.3768 -1.2747 -0.3086 13 6 4.2380 1.4368 -1.2677 14 6 4.4894 2.8556 -1.7091 15 8 4.0946 3.7805 -1.0310 16 7 5.1528 3.0967 -2.8572 17 6 5.3853 4.4061 -3.2642 18 7 5.0141 5.4746 -2.6256 19 7 5.3063 6.5926 -3.1342 20 6 5.9542 6.5675 -4.2555 21 16 6.2149 4.8772 -4.6870 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 7.0608 0.5224 2.3243 30 1 3.6493 0.9195 -2.0253 31 1 5.1904 0.9235 -1.1348 32 1 5.4682 2.3570 -3.3996 33 1 6.2798 7.4272 -4.8223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194970605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:14 Heat of formation + Delta-G solvation = 40.971600 kcal Electronic energy + Delta-G solvation = -18598.334608 eV Core-core repulsion = 15594.049634 eV Total energy + Delta-G solvation = -3004.284974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.30765 -40.75209 -37.93831 -36.19815 -34.63087 -33.26177 -31.74058 -29.41820 -27.59657 -27.05759 -24.33166 -23.41380 -21.75386 -20.91777 -20.65258 -19.04284 -18.39665 -17.99266 -17.38876 -16.91852 -16.26965 -15.78521 -15.56091 -15.42152 -15.16718 -14.55495 -14.35458 -14.28349 -14.08051 -13.43139 -12.82878 -12.61811 -12.48024 -12.30570 -12.16523 -12.05858 -11.72796 -11.55165 -11.37534 -11.34940 -10.82558 -10.65201 -10.60671 -9.87237 -8.89766 -8.22335 -5.64817 -0.48879 -0.37108 0.22704 1.26006 1.40651 1.47257 1.58332 1.78661 1.91992 2.39867 2.95362 3.26979 3.35702 3.83936 4.11551 4.22088 4.29468 4.30537 4.46823 4.55090 4.64740 4.74348 4.92987 5.01686 5.17577 5.26714 5.42098 5.58973 5.86272 6.09033 6.16045 6.84847 7.09772 7.52486 7.70799 7.91466 8.98033 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.005924 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.113259 B = 4725.250749 C = 5363.863357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.151 3.849 4 N -0.587 5.587 5 C -0.262 4.262 6 H 0.019 0.981 7 C -0.028 4.028 8 N -0.950 5.950 9 Si 0.943 3.057 10 H -0.253 1.253 11 H -0.307 1.307 12 H -0.232 1.232 13 C 0.121 3.879 14 C 0.475 3.525 15 O -0.504 6.504 16 N -0.624 5.624 17 C 0.210 3.790 18 N -0.342 5.342 19 N -0.279 5.279 20 C -0.015 4.015 21 S 0.187 5.813 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.030 0.970 28 H 0.057 0.943 29 H 0.265 0.735 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.441 0.559 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -0.270 -21.637 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.026 3.974 4 N -0.306 5.306 5 C -0.392 4.392 6 H 0.037 0.963 7 C -0.225 4.225 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.179 1.179 11 H -0.235 1.235 12 H -0.155 1.155 13 C -0.010 4.010 14 C 0.258 3.742 15 O -0.372 6.372 16 N -0.281 5.281 17 C -0.160 4.160 18 N -0.187 5.187 19 N -0.112 5.112 20 C -0.318 4.318 21 S 0.424 5.576 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.099 0.901 32 H 0.283 0.717 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.724 0.420 -20.652 20.728 hybrid contribution 0.742 -0.436 0.382 0.941 sum -0.982 -0.016 -20.270 20.294 Atomic orbital electron populations 1.21668 0.94201 1.02125 1.01855 1.21973 0.96421 0.97596 1.01469 1.21062 0.81236 0.95619 0.99434 1.43860 1.02134 1.84184 1.00430 1.18504 1.06732 1.22998 0.90973 0.96279 1.26319 0.95911 1.00812 0.99416 1.70081 1.09103 1.40549 1.39567 0.85857 0.79691 0.79178 0.78464 1.17917 1.23514 1.15494 1.21685 0.99477 0.89498 0.90362 1.23916 0.76216 0.95282 0.78802 1.90764 1.47441 1.46960 1.52063 1.43650 1.56552 1.02874 1.25003 1.26665 0.99903 0.92291 0.97160 1.71498 1.24836 0.93490 1.28843 1.71354 1.13150 1.17248 1.09476 1.32021 1.01840 1.00851 0.97119 1.84244 1.51918 1.03256 1.18188 0.93418 0.91772 0.91605 0.91565 0.93986 0.95135 0.92502 0.92632 0.85032 0.90092 0.71737 0.72004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.14 -4.45 6.26 30.59 0.19 -4.26 16 3 C 0.15 6.04 5.67 86.38 0.49 6.53 16 4 N -0.59 -27.56 1.56 -706.35 -1.10 -28.66 16 5 C -0.26 -15.36 9.90 84.03 0.83 -14.53 16 6 H 0.02 1.32 8.06 -2.91 -0.02 1.30 16 7 C -0.03 -1.64 5.29 84.86 0.45 -1.19 16 8 N -0.95 -60.38 13.97 21.65 0.30 -60.08 16 9 Si 0.94 41.41 25.10 68.60 1.72 43.14 16 10 H -0.25 -9.69 6.68 99.48 0.66 -9.02 16 11 H -0.31 -14.01 7.11 99.48 0.71 -13.31 16 12 H -0.23 -9.08 7.11 99.48 0.71 -8.37 16 13 C 0.12 4.60 5.00 85.63 0.43 5.02 16 14 C 0.47 19.36 7.86 87.66 0.69 20.05 16 15 O -0.50 -26.68 15.11 -3.03 -0.05 -26.72 16 16 N -0.62 -18.78 5.41 -313.16 -1.69 -20.48 16 17 C 0.21 6.61 8.14 179.10 1.46 8.07 16 18 N -0.34 -13.79 9.74 -59.09 -0.58 -14.37 16 19 N -0.28 -9.37 11.65 -57.36 -0.67 -10.04 16 20 C -0.02 -0.31 12.69 130.58 1.66 1.35 16 21 S 0.19 3.31 23.31 -56.49 -1.32 1.99 16 22 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.03 1.35 8.04 -2.38 -0.02 1.33 16 28 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.13 3.57 8.07 -2.39 -0.02 3.55 16 31 H 0.08 3.17 3.38 -2.38 -0.01 3.16 16 32 H 0.44 8.41 8.82 -92.71 -0.82 7.59 16 33 H 0.26 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -87.97 298.96 3.81 -84.16 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.28 Total: 12.87 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.91 Total: 18.18 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -3.73 Total: -133.62 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.72 Total: 43.14 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.32 Total: 1.99 kcal Total: -87.97 3.81 -84.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194970605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.133 kcal (2) G-P(sol) polarization free energy of solvation -87.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds