Wall clock time and date at job start Mon Mar 30 2020 01:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99653 * 2 1 4 4 H 1.48500 * 109.46999 * 239.99830 * 3 2 1 5 5 H 1.48501 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47532 * 120.00000 * 3 2 1 7 7 C 1.37876 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99568 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46924 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00122 * 85.06158 * 10 9 7 12 12 C 1.50697 * 109.46858 * 90.00194 * 11 10 9 13 13 C 1.38672 * 120.42131 * 270.25242 * 12 11 10 14 14 C 1.38628 * 118.42108 * 180.24272 * 13 12 11 15 15 C 1.38221 * 119.16217 * 359.75082 * 14 13 12 16 16 N 1.31855 * 120.76643 * 359.97438 * 15 14 13 17 17 C 1.31881 * 121.72273 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99700 * 265.06812 * 10 9 7 19 19 O 1.21281 * 119.99993 * 185.74398 * 18 10 9 20 20 C 1.50703 * 120.00033 * 5.73435 * 18 10 9 21 21 F 1.39897 * 109.47106 * 26.32169 * 20 18 10 22 22 F 1.39903 * 109.46878 * 146.31764 * 20 18 10 23 23 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47129 * 60.00204 * 9 7 2 25 25 H 1.08998 * 109.47386 * 299.99707 * 9 7 2 26 26 H 1.08998 * 109.46991 * 330.00273 * 11 10 9 27 27 H 1.09003 * 109.46864 * 210.00011 * 11 10 9 28 28 H 1.08004 * 120.78370 * 359.96665 * 13 12 11 29 29 H 1.07999 * 120.41477 * 179.72762 * 14 13 12 30 30 H 1.08007 * 119.61736 * 180.02562 * 15 14 13 31 31 H 1.08008 * 119.61777 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47376 * 266.31573 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7613 -4.0979 1.2664 12 6 1.8766 -5.1841 1.8218 13 6 0.8269 -4.8689 2.6714 14 6 0.0426 -5.9012 3.1622 15 6 0.3276 -7.2007 2.7870 16 7 1.3309 -7.4629 1.9726 17 6 2.0971 -6.5062 1.4857 18 6 2.5657 -4.1905 -1.1606 19 8 3.2711 -5.1771 -1.1533 20 6 2.0944 -3.6109 -2.4695 21 9 1.8433 -2.2439 -2.3106 22 9 3.0824 -3.7936 -3.4430 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5568 0.8903 26 1 2.8166 -3.2747 1.9787 27 1 3.7609 -4.4964 1.0932 28 1 0.6280 -3.8439 2.9476 29 1 -0.7806 -5.6928 3.8295 30 1 -0.2790 -8.0106 3.1647 31 1 2.9102 -6.7596 0.8215 32 1 1.1794 -4.1146 -2.7814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236126532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:28 Heat of formation + Delta-G solvation = -87.329377 kcal Electronic energy + Delta-G solvation = -20943.193331 eV Core-core repulsion = 17347.211671 eV Total energy + Delta-G solvation = -3595.981660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.50358 -46.50811 -40.13589 -38.90073 -35.49866 -33.05379 -32.19693 -31.46535 -28.06687 -27.63331 -25.35664 -23.48212 -22.90885 -22.01501 -19.48465 -17.53059 -17.06673 -16.92169 -16.76312 -16.31968 -15.99721 -15.44805 -15.16503 -14.69423 -14.11356 -13.97610 -13.44252 -13.21122 -13.06239 -12.99900 -12.83707 -12.56029 -12.37905 -11.86933 -11.61947 -11.32801 -11.16408 -10.97433 -10.60060 -10.21565 -9.93640 -9.66140 -9.40014 -9.28290 -8.82535 -8.55759 -8.06116 -6.20723 -4.25337 1.22611 1.45530 2.68977 3.24089 3.28731 3.29569 3.34296 4.01917 4.29722 4.41983 4.58720 4.64887 4.97990 5.06112 5.13296 5.17259 5.19310 5.24243 5.34450 5.54485 5.81673 5.97420 6.04985 6.27585 6.42508 6.51294 6.87442 7.02405 7.20830 7.69537 7.90948 7.98734 8.12412 8.36638 8.77469 9.40053 10.87253 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.007248 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.443908 B = 3862.327914 C = 5008.154413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.227 3.773 10 N -0.572 5.572 11 C 0.161 3.839 12 C -0.150 4.150 13 C -0.056 4.056 14 C -0.179 4.179 15 C 0.090 3.910 16 N -0.492 5.492 17 C 0.118 3.882 18 C 0.473 3.527 19 O -0.540 6.540 20 C 0.253 3.747 21 F -0.151 7.151 22 F -0.191 7.191 23 H 0.265 0.735 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -7.743 3.241 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.108 3.892 10 N -0.302 5.302 11 C 0.038 3.962 12 C -0.153 4.153 13 C -0.083 4.083 14 C -0.198 4.198 15 C -0.067 4.067 16 N -0.201 5.201 17 C -0.040 4.040 18 C 0.257 3.743 19 O -0.420 6.420 20 C 0.196 3.804 21 F -0.132 7.132 22 F -0.172 7.172 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.113 -8.932 3.007 9.425 hybrid contribution 0.095 2.082 0.164 2.091 sum -0.018 -6.850 3.170 7.548 Atomic orbital electron populations 1.69897 1.05968 1.27387 1.49779 1.24854 0.94816 0.99132 0.94686 0.86578 0.79577 0.82631 0.78823 1.20017 1.21193 1.20216 1.21265 0.93400 0.90040 1.51733 0.92126 1.19913 0.87436 0.82440 0.99378 1.48333 1.44251 1.33757 1.03847 1.20233 0.95363 0.94695 0.85918 1.21379 0.98591 0.96623 0.98680 1.21662 0.92576 1.00194 0.93851 1.22114 1.01336 0.94049 1.02343 1.22728 0.94210 0.95717 0.94005 1.67724 1.05296 1.37236 1.09835 1.22874 0.97244 0.88193 0.95641 1.21039 0.82003 0.84745 0.86541 1.90671 1.38531 1.25632 1.87120 1.21526 0.90624 0.81695 0.86526 1.93308 1.93958 1.30688 1.95199 1.92989 1.65217 1.95361 1.63669 0.92506 0.93078 0.94682 0.88407 0.89549 0.84351 0.84980 0.83214 0.82344 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.29 55.43 0.74 -23.07 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -13.06 7.58 -34.44 -0.26 -13.32 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.23 5.03 4.65 -5.19 -0.02 5.01 16 10 N -0.57 -11.16 2.44 -176.43 -0.43 -11.59 16 11 C 0.16 2.72 5.53 -5.20 -0.03 2.69 16 12 C -0.15 -2.36 5.48 -104.48 -0.57 -2.93 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 15 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 16 N -0.49 -7.76 10.36 -13.25 -0.14 -7.90 16 17 C 0.12 1.90 10.73 -17.55 -0.19 1.71 16 18 C 0.47 9.29 7.53 -10.98 -0.08 9.21 16 19 O -0.54 -11.20 15.72 5.56 0.09 -11.11 16 20 C 0.25 4.61 5.20 36.01 0.19 4.80 16 21 F -0.15 -3.22 12.37 2.25 0.03 -3.20 16 22 F -0.19 -3.58 17.14 2.25 0.04 -3.54 16 23 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 24 H 0.05 1.18 5.79 -51.93 -0.30 0.88 16 25 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 26 H 0.10 1.59 8.03 -51.93 -0.42 1.18 16 27 H 0.09 1.42 7.46 -51.93 -0.39 1.03 16 28 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.16 2.60 7.38 -52.48 -0.39 2.21 16 32 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -28.96 290.70 -5.52 -34.47 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.15 Total: 0.32 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.05 Total: 5.97 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.17 Total: -42.56 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.07 Total: -6.73 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.96 -5.52 -34.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236126532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.856 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds