Wall clock time and date at job start Mon Mar 30 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99653 * 2 1 4 4 H 1.48500 * 109.46999 * 239.99830 * 3 2 1 5 5 H 1.48501 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47532 * 120.00000 * 3 2 1 7 7 C 1.37876 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99568 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46924 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00122 * 85.06158 * 10 9 7 12 12 C 1.50697 * 109.46858 * 90.00194 * 11 10 9 13 13 C 1.38672 * 120.42131 * 270.25242 * 12 11 10 14 14 C 1.38628 * 118.42108 * 180.24272 * 13 12 11 15 15 C 1.38221 * 119.16217 * 359.75082 * 14 13 12 16 16 N 1.31855 * 120.76643 * 359.97438 * 15 14 13 17 17 C 1.31881 * 121.72273 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99700 * 265.06812 * 10 9 7 19 19 O 1.21281 * 119.99993 * 185.74398 * 18 10 9 20 20 C 1.50703 * 120.00033 * 5.73435 * 18 10 9 21 21 F 1.39897 * 109.47106 * 26.32169 * 20 18 10 22 22 F 1.39903 * 109.46878 * 146.31764 * 20 18 10 23 23 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47129 * 60.00204 * 9 7 2 25 25 H 1.08998 * 109.47386 * 299.99707 * 9 7 2 26 26 H 1.08998 * 109.46991 * 330.00273 * 11 10 9 27 27 H 1.09003 * 109.46864 * 210.00011 * 11 10 9 28 28 H 1.08004 * 120.78370 * 359.96665 * 13 12 11 29 29 H 1.07999 * 120.41477 * 179.72762 * 14 13 12 30 30 H 1.08007 * 119.61736 * 180.02562 * 15 14 13 31 31 H 1.08008 * 119.61777 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47376 * 266.31573 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7613 -4.0979 1.2664 12 6 1.8766 -5.1841 1.8218 13 6 0.8269 -4.8689 2.6714 14 6 0.0426 -5.9012 3.1622 15 6 0.3276 -7.2007 2.7870 16 7 1.3309 -7.4629 1.9726 17 6 2.0971 -6.5062 1.4857 18 6 2.5657 -4.1905 -1.1606 19 8 3.2711 -5.1771 -1.1533 20 6 2.0944 -3.6109 -2.4695 21 9 1.8433 -2.2439 -2.3106 22 9 3.0824 -3.7936 -3.4430 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5568 0.8903 26 1 2.8166 -3.2747 1.9787 27 1 3.7609 -4.4964 1.0932 28 1 0.6280 -3.8439 2.9476 29 1 -0.7806 -5.6928 3.8295 30 1 -0.2790 -8.0106 3.1647 31 1 2.9102 -6.7596 0.8215 32 1 1.1794 -4.1146 -2.7814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236126532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:27 Heat of formation + Delta-G solvation = -104.049478 kcal Electronic energy + Delta-G solvation = -20943.918369 eV Core-core repulsion = 17347.211671 eV Total energy + Delta-G solvation = -3596.706698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.03546 -48.06184 -41.37723 -40.35069 -37.07794 -34.77894 -33.57561 -32.65816 -29.51134 -29.36849 -26.78309 -24.99102 -24.34778 -23.22413 -20.99897 -19.06806 -18.67452 -18.45043 -18.10370 -17.90094 -17.24576 -16.91730 -16.54912 -16.36843 -15.62124 -15.37284 -14.84556 -14.66705 -14.59523 -14.37838 -14.22124 -14.04854 -13.90762 -13.25279 -13.20485 -12.93703 -12.76143 -12.53637 -12.35565 -12.02585 -11.75662 -11.02073 -10.72113 -10.52798 -10.45807 -9.98621 -9.66681 -8.15791 -6.24742 0.10402 0.33248 1.13345 1.44235 1.47160 1.52865 1.84818 2.43891 2.83537 3.01428 3.11158 3.19360 3.52733 3.73623 3.79401 3.87436 3.92432 4.09612 4.09844 4.44710 4.66077 4.70774 4.79181 4.87630 5.16611 5.24077 5.34618 5.52072 5.75230 5.78209 6.07191 6.28357 6.72989 6.89436 7.00943 7.43074 8.91021 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.007248 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.443908 B = 3862.327914 C = 5008.154413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.050 0.950 9 C 0.243 3.757 10 N -0.573 5.573 11 C 0.161 3.839 12 C -0.159 4.159 13 C -0.065 4.065 14 C -0.167 4.167 15 C 0.091 3.909 16 N -0.513 5.513 17 C 0.106 3.894 18 C 0.468 3.532 19 O -0.554 6.554 20 C 0.251 3.749 21 F -0.171 7.171 22 F -0.194 7.194 23 H 0.266 0.734 24 H 0.044 0.956 25 H 0.029 0.971 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.167 0.833 30 H 0.186 0.814 31 H 0.147 0.853 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -8.101 4.011 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.068 0.932 9 C 0.123 3.877 10 N -0.302 5.302 11 C 0.039 3.961 12 C -0.162 4.162 13 C -0.092 4.092 14 C -0.187 4.187 15 C -0.066 4.066 16 N -0.222 5.222 17 C -0.051 4.051 18 C 0.252 3.748 19 O -0.434 6.434 20 C 0.195 3.805 21 F -0.152 7.152 22 F -0.175 7.175 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.185 0.815 30 H 0.203 0.797 31 H 0.164 0.836 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.862 -9.297 3.785 10.075 hybrid contribution 0.320 2.114 -0.032 2.138 sum -0.542 -7.183 3.753 8.122 Atomic orbital electron populations 1.69970 1.06903 1.27925 1.50917 1.25446 0.95452 1.01668 0.94722 0.85786 0.78543 0.79753 0.78638 1.20495 1.20869 1.19556 1.21446 0.93015 0.91299 1.50893 0.93151 1.19559 0.87361 0.82255 0.98538 1.48298 1.43889 1.33110 1.04904 1.20299 0.95628 0.95215 0.84971 1.21207 0.99301 0.95967 0.99773 1.21828 0.92514 1.01065 0.93772 1.22477 1.01332 0.93172 1.01678 1.23362 0.93379 0.97170 0.92717 1.67729 1.06278 1.37351 1.10871 1.22712 0.97614 0.88533 0.96241 1.21314 0.81766 0.84618 0.87061 1.90666 1.39101 1.26237 1.87378 1.21861 0.92044 0.80732 0.85891 1.93257 1.94107 1.32484 1.95325 1.92978 1.65654 1.95266 1.63630 0.92531 0.93809 0.95345 0.88202 0.89610 0.84061 0.81504 0.79699 0.83568 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.64 13.29 21.45 0.28 -48.35 16 2 C 0.03 1.39 5.46 84.65 0.46 1.85 16 3 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.53 -26.10 7.58 25.60 0.19 -25.90 16 8 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 9 C 0.24 10.70 4.65 85.63 0.40 11.10 16 10 N -0.57 -22.22 2.44 -830.49 -2.03 -24.25 16 11 C 0.16 5.45 5.53 85.63 0.47 5.92 16 12 C -0.16 -4.95 5.48 -19.77 -0.11 -5.05 16 13 C -0.07 -1.78 9.86 22.47 0.22 -1.56 16 14 C -0.17 -3.70 10.11 22.36 0.23 -3.47 16 15 C 0.09 2.12 11.18 84.69 0.95 3.07 16 16 N -0.51 -15.51 10.36 -195.83 -2.03 -17.53 16 17 C 0.11 3.38 10.73 84.67 0.91 4.29 16 18 C 0.47 18.20 7.53 87.66 0.66 18.86 16 19 O -0.55 -22.87 15.72 -3.03 -0.05 -22.91 16 20 C 0.25 8.89 5.20 71.24 0.37 9.26 16 21 F -0.17 -7.23 12.37 44.97 0.56 -6.68 16 22 F -0.19 -7.09 17.14 44.97 0.77 -6.31 16 23 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 24 H 0.04 2.02 5.79 -2.39 -0.01 2.00 16 25 H 0.03 1.30 8.11 -2.39 -0.02 1.28 16 26 H 0.10 3.26 8.03 -2.39 -0.02 3.24 16 27 H 0.09 2.86 7.46 -2.39 -0.02 2.84 16 28 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.15 4.91 7.38 -2.91 -0.02 4.89 16 32 H 0.17 4.40 8.14 -2.39 -0.02 4.39 16 Total: -1.00 -60.56 290.70 5.43 -55.12 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.15 Total: 9.34 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 4.75 Total: 18.37 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -3.77 Total: -90.13 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 1.33 Total: -12.99 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -60.56 5.43 -55.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236126532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.926 kcal (2) G-P(sol) polarization free energy of solvation -60.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds