Wall clock time and date at job start Mon Mar 30 2020 01:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46994 * 2 1 4 4 C 1.37097 * 120.00058 * 264.74558 * 3 2 1 5 5 H 1.07991 * 120.00098 * 146.16069 * 4 3 2 6 6 C 1.38951 * 119.99834 * 326.16767 * 4 3 2 7 7 N 1.31412 * 119.99674 * 337.68189 * 6 4 3 8 8 Si 1.86797 * 120.00038 * 157.68548 * 6 4 3 9 9 H 1.48501 * 109.47067 * 89.99928 * 8 6 4 10 10 H 1.48503 * 109.47045 * 209.99653 * 8 6 4 11 11 H 1.48492 * 109.47083 * 329.99642 * 8 6 4 12 12 C 1.34778 * 119.99880 * 84.74552 * 3 2 1 13 13 O 1.21293 * 119.99524 * 179.97438 * 12 3 2 14 14 C 1.50698 * 120.00335 * 0.02562 * 12 3 2 15 15 S 1.80999 * 109.47313 * 180.02562 * 14 12 3 16 16 C 1.76196 * 100.00085 * 180.02562 * 15 14 12 17 17 N 1.31291 * 126.48346 * 359.68222 * 16 15 14 18 18 N 1.28530 * 109.85501 * 179.88486 * 17 16 15 19 19 C 1.30302 * 110.07637 * 0.39415 * 18 17 16 20 20 N 1.36537 * 126.48559 * 180.02562 * 16 15 14 21 21 C 1.46500 * 127.14111 * 359.96305 * 20 16 15 22 22 H 1.08997 * 109.47054 * 60.00440 * 1 2 3 23 23 H 1.09001 * 109.46754 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47327 * 300.00090 * 1 2 3 25 25 H 1.09000 * 109.47327 * 239.99910 * 2 1 3 26 26 H 1.08998 * 109.46533 * 119.99556 * 2 1 3 27 27 H 0.97004 * 120.00140 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46682 * 299.99704 * 14 12 3 29 29 H 1.08996 * 109.46876 * 59.99750 * 14 12 3 30 30 H 1.08001 * 126.33622 * 179.75847 * 19 18 17 31 31 H 1.09002 * 109.47633 * 90.00126 * 21 20 16 32 32 H 1.09007 * 109.47283 * 210.00244 * 21 20 16 33 33 H 1.09001 * 109.47222 * 329.99809 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1815 3.0505 -1.3089 6 6 2.9007 1.2466 -2.2178 7 7 3.5052 0.1088 -1.9592 8 14 2.7827 1.8630 -3.9772 9 1 3.9650 2.7066 -4.2865 10 1 2.7445 0.7048 -4.9059 11 1 1.5449 2.6673 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7789 1.3815 2.4620 15 16 2.0513 2.5327 3.8319 16 6 1.5621 1.5177 5.1865 17 7 1.1268 0.2809 5.1179 18 7 0.8633 -0.1551 6.2980 19 6 1.1044 0.7717 7.1815 20 7 1.5577 1.8707 6.5054 21 6 1.9561 3.1591 7.0776 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8905 -0.4109 -2.6820 28 1 0.7295 1.0875 2.4382 29 1 2.4009 0.4973 2.6008 30 1 0.9706 0.6877 8.2499 31 1 1.0899 3.8190 7.1253 32 1 2.3506 3.0043 8.0819 33 1 2.7244 3.6128 6.4514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263833891.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:54 Heat of formation + Delta-G solvation = 55.939730 kcal Electronic energy + Delta-G solvation = -18254.802947 eV Core-core repulsion = 15251.167039 eV Total energy + Delta-G solvation = -3003.635907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.77208 -38.59782 -35.11710 -34.99275 -32.20474 -30.74184 -29.55222 -29.13726 -27.74355 -24.77438 -22.68474 -22.37172 -22.20158 -19.29792 -17.86882 -16.88240 -16.38954 -16.10921 -16.05885 -15.21385 -15.07438 -14.41339 -14.12691 -13.62920 -13.39422 -13.05477 -12.97434 -12.80201 -12.31820 -11.83946 -11.58883 -11.46708 -11.13621 -10.99915 -10.76606 -10.43371 -10.38418 -10.31952 -10.14787 -10.04658 -9.95497 -9.00341 -8.63757 -7.60401 -7.42501 -6.40018 -4.01454 1.23856 1.66164 2.34715 2.61536 2.86091 3.13758 3.23816 3.29483 3.73867 4.10456 4.39825 4.50961 4.75267 4.83315 4.95923 5.12142 5.17709 5.49337 5.59301 5.63369 5.78948 5.94496 6.03951 6.22349 6.32850 6.54678 6.66173 6.87492 7.24338 7.53802 8.12542 8.39656 8.65511 9.06387 9.30175 9.86230 10.63435 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038185 B = 0.004542 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.103639 B = 6163.186650 C = 6624.940406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.425 5.425 4 C -0.309 4.309 5 H 0.095 0.905 6 C 0.038 3.962 7 N -0.865 5.865 8 Si 0.920 3.080 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.467 3.533 13 O -0.574 6.574 14 C -0.125 4.125 15 S 0.066 5.934 16 C 0.150 3.850 17 N -0.299 5.299 18 N -0.290 5.290 19 C 0.146 3.854 20 N -0.472 5.472 21 C 0.074 3.926 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.116 0.884 26 H 0.051 0.949 27 H 0.270 0.730 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 1.954 14.484 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.144 5.144 4 C -0.437 4.437 5 H 0.113 0.887 6 C -0.167 4.167 7 N -0.502 5.502 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.253 3.747 13 O -0.459 6.459 14 C -0.277 4.277 15 S 0.294 5.706 16 C -0.225 4.225 17 N -0.143 5.143 18 N -0.129 5.129 19 C -0.144 4.144 20 N -0.167 5.167 21 C -0.069 4.069 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.134 0.866 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.236 0.764 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.744 2.137 13.754 14.414 hybrid contribution -0.122 -0.096 -0.002 0.155 sum -3.866 2.041 13.752 14.430 Atomic orbital electron populations 1.22194 0.97863 1.00691 1.01501 1.21704 0.92042 0.85038 1.04531 1.43442 1.54660 1.11962 1.04300 1.19487 1.40286 0.95676 0.88250 0.88708 1.25371 0.94252 0.96396 1.00691 1.69925 1.31964 1.15133 1.33184 0.86039 0.79144 0.78417 0.81762 1.20198 1.20711 1.19281 1.19398 0.83586 0.88067 0.83648 1.90550 1.51009 1.18286 1.86008 1.23889 1.07214 1.01748 0.94873 1.86077 1.80602 1.13272 0.90680 1.27708 1.06138 0.98560 0.90084 1.74734 1.18055 1.06051 1.15507 1.73898 1.18318 1.25041 0.95646 1.26628 1.03238 0.83505 1.01017 1.46502 1.50344 1.14208 1.05624 1.22132 1.02465 0.81896 1.00425 0.92322 0.92770 0.93896 0.86596 0.93031 0.92007 0.87205 0.87006 0.76434 0.89752 0.88852 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.15 37.16 0.38 -2.65 16 2 C 0.09 1.98 5.43 -4.04 -0.02 1.96 16 3 N -0.43 -10.68 2.56 -114.81 -0.29 -10.97 16 4 C -0.31 -8.42 8.98 -14.93 -0.13 -8.55 16 5 H 0.10 2.69 7.70 -52.49 -0.40 2.29 16 6 C 0.04 0.98 4.92 -17.47 -0.09 0.89 16 7 N -0.86 -22.87 11.33 55.50 0.63 -22.24 16 8 Si 0.92 20.16 29.61 -169.99 -5.03 15.13 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 C 0.47 11.34 7.61 -10.99 -0.08 11.26 16 13 O -0.57 -15.60 15.69 5.55 0.09 -15.52 16 14 C -0.13 -2.45 4.32 36.00 0.16 -2.30 16 15 S 0.07 1.15 20.94 -107.50 -2.25 -1.10 16 16 C 0.15 2.40 8.07 -88.33 -0.71 1.69 16 17 N -0.30 -5.42 11.60 30.68 0.36 -5.06 16 18 N -0.29 -4.74 12.18 29.90 0.36 -4.38 16 19 C 0.15 1.71 12.80 -88.95 -1.14 0.57 16 20 N -0.47 -5.69 3.21 -125.58 -0.40 -6.09 16 21 C 0.07 0.52 11.09 59.85 0.66 1.19 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.75 6.60 -51.93 -0.34 0.41 16 25 H 0.12 2.77 5.34 -51.93 -0.28 2.49 16 26 H 0.05 1.05 6.66 -51.93 -0.35 0.70 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.11 2.04 6.54 -51.91 -0.34 1.70 16 29 H 0.11 2.16 7.41 -51.92 -0.38 1.78 16 30 H 0.22 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -33.52 298.85 -6.77 -40.30 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.75 Total: 1.39 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.98 Total: 4.05 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.65 Total: -48.75 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.25 Total: -1.10 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.52 -6.77 -40.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263833891.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.235 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds