Wall clock time and date at job start Mon Mar 30 2020 01:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46994 * 2 1 4 4 C 1.37097 * 120.00058 * 264.74558 * 3 2 1 5 5 H 1.07991 * 120.00098 * 146.16069 * 4 3 2 6 6 C 1.38951 * 119.99834 * 326.16767 * 4 3 2 7 7 N 1.31412 * 119.99674 * 337.68189 * 6 4 3 8 8 Si 1.86797 * 120.00038 * 157.68548 * 6 4 3 9 9 H 1.48501 * 109.47067 * 89.99928 * 8 6 4 10 10 H 1.48503 * 109.47045 * 209.99653 * 8 6 4 11 11 H 1.48492 * 109.47083 * 329.99642 * 8 6 4 12 12 C 1.34778 * 119.99880 * 84.74552 * 3 2 1 13 13 O 1.21293 * 119.99524 * 179.97438 * 12 3 2 14 14 C 1.50698 * 120.00335 * 0.02562 * 12 3 2 15 15 S 1.80999 * 109.47313 * 180.02562 * 14 12 3 16 16 C 1.76196 * 100.00085 * 180.02562 * 15 14 12 17 17 N 1.31291 * 126.48346 * 359.68222 * 16 15 14 18 18 N 1.28530 * 109.85501 * 179.88486 * 17 16 15 19 19 C 1.30302 * 110.07637 * 0.39415 * 18 17 16 20 20 N 1.36537 * 126.48559 * 180.02562 * 16 15 14 21 21 C 1.46500 * 127.14111 * 359.96305 * 20 16 15 22 22 H 1.08997 * 109.47054 * 60.00440 * 1 2 3 23 23 H 1.09001 * 109.46754 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47327 * 300.00090 * 1 2 3 25 25 H 1.09000 * 109.47327 * 239.99910 * 2 1 3 26 26 H 1.08998 * 109.46533 * 119.99556 * 2 1 3 27 27 H 0.97004 * 120.00140 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46682 * 299.99704 * 14 12 3 29 29 H 1.08996 * 109.46876 * 59.99750 * 14 12 3 30 30 H 1.08001 * 126.33622 * 179.75847 * 19 18 17 31 31 H 1.09002 * 109.47633 * 90.00126 * 21 20 16 32 32 H 1.09007 * 109.47283 * 210.00244 * 21 20 16 33 33 H 1.09001 * 109.47222 * 329.99809 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1815 3.0505 -1.3089 6 6 2.9007 1.2466 -2.2178 7 7 3.5052 0.1088 -1.9592 8 14 2.7827 1.8630 -3.9772 9 1 3.9650 2.7066 -4.2865 10 1 2.7445 0.7048 -4.9059 11 1 1.5449 2.6673 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7789 1.3815 2.4620 15 16 2.0513 2.5327 3.8319 16 6 1.5621 1.5177 5.1865 17 7 1.1268 0.2809 5.1179 18 7 0.8633 -0.1551 6.2980 19 6 1.1044 0.7717 7.1815 20 7 1.5577 1.8707 6.5054 21 6 1.9561 3.1591 7.0776 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8905 -0.4109 -2.6820 28 1 0.7295 1.0875 2.4382 29 1 2.4009 0.4973 2.6008 30 1 0.9706 0.6877 8.2499 31 1 1.0899 3.8190 7.1253 32 1 2.3506 3.0043 8.0819 33 1 2.7244 3.6128 6.4514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263833891.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:53 Heat of formation + Delta-G solvation = 35.393709 kcal Electronic energy + Delta-G solvation = -18255.693889 eV Core-core repulsion = 15251.167039 eV Total energy + Delta-G solvation = -3004.526850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.83584 -40.49719 -37.02655 -35.94160 -34.14935 -31.93243 -31.30145 -30.76177 -28.47703 -26.72121 -24.06523 -23.74357 -23.29933 -21.07800 -19.04473 -18.75814 -17.91128 -17.40187 -17.20339 -16.94304 -16.24729 -16.17815 -15.81636 -14.77439 -14.63733 -14.51015 -14.33965 -14.06841 -13.72231 -13.58115 -13.28490 -12.89580 -12.74094 -12.68905 -12.32083 -12.09625 -11.98252 -11.85712 -11.34565 -11.30471 -11.04557 -10.92730 -10.59501 -9.55414 -8.75276 -8.38099 -6.08416 -0.04969 0.63596 0.93716 1.36945 1.44006 1.56824 1.75110 1.76850 1.87178 2.28549 2.94166 2.98304 3.66841 3.80137 3.84915 3.99800 4.17903 4.19043 4.36316 4.41836 4.59838 4.65832 4.69537 4.79527 4.94578 5.00722 5.26532 5.43416 5.53514 5.82492 6.13401 6.42396 7.07807 7.35389 7.56348 7.91672 8.64465 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038185 B = 0.004542 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.103639 B = 6163.186650 C = 6624.940406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 N -0.437 5.437 4 C -0.344 4.344 5 H 0.072 0.928 6 C 0.006 3.994 7 N -0.885 5.885 8 Si 0.985 3.015 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.266 1.266 12 C 0.457 3.543 13 O -0.612 6.612 14 C -0.113 4.113 15 S 0.069 5.931 16 C 0.132 3.868 17 N -0.334 5.334 18 N -0.340 5.340 19 C 0.177 3.823 20 N -0.465 5.465 21 C 0.063 3.937 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.276 0.724 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.275 0.725 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 1.807 16.155 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 N -0.155 5.155 4 C -0.472 4.472 5 H 0.089 0.911 6 C -0.197 4.197 7 N -0.522 5.522 8 Si 0.808 3.192 9 H -0.203 1.203 10 H -0.192 1.192 11 H -0.190 1.190 12 C 0.244 3.756 13 O -0.500 6.500 14 C -0.265 4.265 15 S 0.296 5.704 16 C -0.244 4.244 17 N -0.178 5.178 18 N -0.178 5.178 19 C -0.113 4.113 20 N -0.159 5.159 21 C -0.078 4.078 22 H 0.067 0.933 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.290 0.710 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.353 1.973 15.444 16.167 hybrid contribution 0.095 -0.042 -0.339 0.355 sum -4.258 1.931 15.105 15.812 Atomic orbital electron populations 1.22091 0.95149 1.02618 1.01320 1.21779 0.94253 0.83298 1.03970 1.43694 1.54619 1.12988 1.04190 1.19472 1.42357 0.95240 0.90142 0.91058 1.26127 0.93165 0.96408 1.03985 1.69990 1.31809 1.15850 1.34552 0.85080 0.78920 0.78246 0.76964 1.20259 1.19164 1.19005 1.20027 0.82842 0.87716 0.84985 1.90506 1.52582 1.19959 1.86928 1.23559 1.07573 1.01696 0.93675 1.85915 1.81406 1.12691 0.90381 1.27365 1.07477 0.98283 0.91324 1.74626 1.18951 1.07131 1.17120 1.73813 1.20973 1.27134 0.95891 1.27666 0.99293 0.81854 1.02525 1.46819 1.49171 1.15780 1.04111 1.22567 1.03200 0.80000 1.02001 0.93331 0.89729 0.93192 0.88559 0.92005 0.91394 0.86243 0.87027 0.70971 0.88067 0.84797 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.15 71.98 0.73 -4.83 16 2 C 0.09 3.98 5.43 86.38 0.47 4.45 16 3 N -0.44 -22.56 2.56 -635.54 -1.63 -24.19 16 4 C -0.34 -19.34 8.98 84.04 0.75 -18.59 16 5 H 0.07 4.25 7.70 -2.92 -0.02 4.22 16 6 C 0.01 0.33 4.92 84.93 0.42 0.75 16 7 N -0.88 -47.19 11.33 21.66 0.25 -46.95 16 8 Si 0.99 41.55 29.61 68.60 2.03 43.59 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 C 0.46 22.86 7.61 87.66 0.67 23.52 16 13 O -0.61 -34.55 15.69 -3.07 -0.05 -34.60 16 14 C -0.11 -4.51 4.32 71.24 0.31 -4.20 16 15 S 0.07 2.40 20.94 -56.49 -1.18 1.21 16 16 C 0.13 4.10 8.07 179.55 1.45 5.55 16 17 N -0.33 -11.88 11.60 -56.85 -0.66 -12.54 16 18 N -0.34 -10.55 12.18 -59.32 -0.72 -11.27 16 19 C 0.18 3.52 12.80 179.77 2.30 5.82 16 20 N -0.47 -9.94 3.21 -551.22 -1.77 -11.71 16 21 C 0.06 0.68 11.09 127.77 1.42 2.09 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.05 1.72 6.60 -2.39 -0.02 1.70 16 25 H 0.10 4.66 5.34 -2.39 -0.01 4.65 16 26 H 0.06 2.54 6.66 -2.39 -0.02 2.53 16 27 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.12 4.46 6.54 -2.39 -0.02 4.44 16 29 H 0.11 4.40 7.41 -2.40 -0.02 4.38 16 30 H 0.27 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.09 1.12 7.86 -2.39 -0.02 1.10 16 Total: -1.00 -75.69 298.85 5.91 -69.78 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.13 Total: 12.10 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 8.51 Total: 14.57 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.53 Total: -106.65 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.60 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.18 Total: 1.21 kcal Total: -75.69 5.91 -69.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263833891.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.173 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds