Wall clock time and date at job start Mon Mar 30 2020 01:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47299 * 2 1 4 4 C 1.37097 * 120.00378 * 264.75258 * 3 2 1 5 5 H 1.07993 * 120.00186 * 146.16220 * 4 3 2 6 6 C 1.38949 * 119.99830 * 326.15695 * 4 3 2 7 7 N 1.31415 * 120.00232 * 337.69871 * 6 4 3 8 8 Si 1.86803 * 119.99915 * 157.68778 * 6 4 3 9 9 H 1.48502 * 109.46690 * 60.00646 * 8 6 4 10 10 H 1.48498 * 109.47058 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47381 * 300.00710 * 8 6 4 12 12 C 1.34776 * 119.99876 * 84.74914 * 3 2 1 13 13 O 1.21295 * 120.00522 * 180.02562 * 12 3 2 14 14 C 1.50707 * 119.99920 * 0.02562 * 12 3 2 15 15 S 1.81001 * 109.47293 * 179.97438 * 14 12 3 16 16 C 1.76195 * 100.00128 * 180.02562 * 15 14 12 17 17 N 1.31649 * 126.08779 * 0.02682 * 16 15 14 18 18 C 1.33336 * 109.69238 * 179.97438 * 17 16 15 19 19 C 1.50708 * 125.43082 * 179.97438 * 18 17 16 20 20 N 1.30589 * 109.14082 * 0.02562 * 18 17 16 21 21 N 1.35065 * 126.08696 * 180.02562 * 16 15 14 22 22 H 0.97003 * 126.83795 * 0.04269 * 21 16 15 23 23 H 1.09004 * 109.47467 * 59.99423 * 1 2 3 24 24 H 1.08997 * 109.47079 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47372 * 299.99878 * 1 2 3 26 26 H 1.09001 * 109.47558 * 240.00638 * 2 1 3 27 27 H 1.08998 * 109.47729 * 120.00200 * 2 1 3 28 28 H 0.96998 * 120.00402 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46909 * 59.99922 * 14 12 3 30 30 H 1.09003 * 109.47212 * 299.99906 * 14 12 3 31 31 H 1.08999 * 109.46984 * 89.99831 * 19 18 17 32 32 H 1.08998 * 109.46718 * 209.99836 * 19 18 17 33 33 H 1.08998 * 109.47021 * 329.99487 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3492 1.9914 -1.1823 5 1 2.1814 3.0507 -1.3088 6 6 2.9007 1.2468 -2.2178 7 7 3.5050 0.1089 -1.9595 8 14 2.7826 1.8633 -3.9772 9 1 3.4561 3.1824 -4.0856 10 1 3.4434 0.8933 -4.8869 11 1 1.3541 2.0041 -4.3576 12 6 2.1422 2.0521 1.1623 13 8 2.5461 3.1959 1.1624 14 6 1.7790 1.3813 2.4620 15 16 2.0529 2.5319 3.8321 16 6 1.5634 1.5169 5.1866 17 7 1.1329 0.2752 5.1093 18 6 0.8542 -0.1806 6.3309 19 6 0.3364 -1.5590 6.6521 20 7 1.1004 0.7581 7.2047 21 7 1.5632 1.8742 6.4892 22 1 1.8293 2.7314 6.8572 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8903 -0.4107 -2.6823 29 1 2.4010 0.4970 2.6007 30 1 0.7296 1.0873 2.4383 31 1 1.1765 -2.2322 6.8224 32 1 -0.2817 -1.5151 7.5488 33 1 -0.2603 -1.9266 5.8172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266768283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:51 Heat of formation + Delta-G solvation = 53.688675 kcal Electronic energy + Delta-G solvation = -18166.550722 eV Core-core repulsion = 15162.817201 eV Total energy + Delta-G solvation = -3003.733520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90560 -38.63497 -35.13391 -33.29737 -32.25821 -31.72945 -29.59866 -29.23129 -28.37784 -24.81784 -23.16867 -22.33607 -20.55797 -19.48841 -18.43671 -16.92079 -16.35259 -16.10488 -15.80029 -15.11023 -14.44807 -14.27568 -13.80118 -13.53683 -13.15507 -12.99683 -12.90047 -12.55258 -12.37899 -12.04858 -11.84115 -11.49797 -11.14853 -11.04581 -10.52204 -10.42474 -10.39643 -10.22593 -10.13686 -10.09194 -9.99284 -9.02760 -8.67172 -7.67816 -7.56872 -6.42827 -4.04542 1.12694 1.46744 2.23335 2.78932 2.87485 3.14014 3.21790 3.25324 3.70605 4.07855 4.38015 4.62005 4.72864 4.92937 5.43550 5.45884 5.52470 5.56913 5.64913 5.74499 5.98667 6.13380 6.17722 6.27996 6.41094 6.49133 6.83534 6.83926 7.20254 7.51222 7.96685 8.09325 8.36543 9.03417 9.26934 9.82675 10.60586 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033962 B = 0.004541 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.260634 B = 6164.601231 C = 6712.321919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.425 5.425 4 C -0.310 4.310 5 H 0.095 0.905 6 C 0.038 3.962 7 N -0.865 5.865 8 Si 0.921 3.079 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.573 6.573 14 C -0.124 4.124 15 S 0.075 5.925 16 C 0.253 3.747 17 N -0.542 5.542 18 C 0.231 3.769 19 C -0.058 4.058 20 N -0.322 5.322 21 N -0.470 5.470 22 H 0.443 0.557 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.116 0.884 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 -3.227 11.137 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.143 5.143 4 C -0.438 4.438 5 H 0.113 0.887 6 C -0.166 4.166 7 N -0.502 5.502 8 Si 0.747 3.253 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.251 3.749 13 O -0.458 6.458 14 C -0.276 4.276 15 S 0.302 5.698 16 C -0.132 4.132 17 N -0.276 5.276 18 C -0.053 4.053 19 C -0.117 4.117 20 N -0.153 5.153 21 N -0.190 5.190 22 H 0.289 0.711 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.134 0.866 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.022 -2.064 11.451 12.673 hybrid contribution -0.234 -0.578 -0.646 0.897 sum -5.255 -2.642 10.806 12.303 Atomic orbital electron populations 1.22192 0.97873 1.00640 1.01525 1.21700 0.92014 0.85061 1.04511 1.43432 1.54638 1.11949 1.04293 1.19468 1.40377 0.95704 0.88261 0.88691 1.25369 0.94184 0.96402 1.00692 1.69910 1.31886 1.15127 1.33297 0.86080 0.78746 0.78829 0.81599 1.19618 1.20891 1.19771 1.19431 0.83666 0.88111 0.83684 1.90561 1.51000 1.18246 1.85976 1.23919 1.07352 1.01645 0.94683 1.86410 1.79584 1.12868 0.90960 1.27154 0.98668 0.95839 0.91548 1.71010 1.23919 1.07692 1.25005 1.24350 0.97112 0.97395 0.86482 1.20096 1.01446 0.87155 1.03020 1.77807 1.23528 0.94716 1.19261 1.47762 1.52780 1.14642 1.03832 0.71117 0.92319 0.92808 0.93900 0.86614 0.93045 0.91933 0.86831 0.87041 0.89802 0.90111 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.15 37.15 0.38 -2.50 16 2 C 0.09 1.91 5.43 -4.04 -0.02 1.89 16 3 N -0.42 -10.38 2.56 -114.81 -0.29 -10.67 16 4 C -0.31 -8.30 8.98 -14.93 -0.13 -8.43 16 5 H 0.10 2.65 7.70 -52.49 -0.40 2.25 16 6 C 0.04 0.98 4.92 -17.47 -0.09 0.89 16 7 N -0.86 -22.45 11.33 55.50 0.63 -21.82 16 8 Si 0.92 19.88 29.61 -169.99 -5.03 14.85 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 C 0.47 10.98 7.61 -10.98 -0.08 10.89 16 13 O -0.57 -15.31 15.69 5.54 0.09 -15.22 16 14 C -0.12 -2.30 4.30 36.01 0.15 -2.15 16 15 S 0.08 1.25 21.45 -107.50 -2.31 -1.05 16 16 C 0.25 3.92 8.31 -89.39 -0.74 3.18 16 17 N -0.54 -8.78 10.57 -10.86 -0.11 -8.89 16 18 C 0.23 3.32 8.13 -156.87 -1.28 2.04 16 19 C -0.06 -0.56 10.51 36.01 0.38 -0.18 16 20 N -0.32 -4.69 12.78 32.42 0.41 -4.28 16 21 N -0.47 -6.36 7.47 30.45 0.23 -6.13 16 22 H 0.44 4.48 8.96 -182.35 -1.63 2.84 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 26 H 0.12 2.68 5.34 -51.93 -0.28 2.40 16 27 H 0.05 0.99 6.66 -51.93 -0.35 0.65 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.11 2.06 7.41 -51.91 -0.38 1.67 16 30 H 0.11 1.93 6.54 -51.92 -0.34 1.59 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -31.29 299.34 -8.29 -39.58 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.98 Total: 3.49 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.43 Total: 5.64 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.86 Total: -51.79 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.31 Total: -1.05 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.29 -8.29 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266768283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.265 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds