Wall clock time and date at job start Mon Mar 30 2020 01:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48507 * 109.47320 * 240.00299 * 3 2 1 5 5 H 1.48502 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47262 * 120.00403 * 3 2 1 7 7 C 1.37879 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46867 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46945 * 179.97438 * 10 9 7 12 12 C 1.34783 * 119.99596 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00246 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99679 * 180.02562 * 12 11 10 15 15 C 1.40213 * 119.99995 * 185.11363 * 14 12 11 16 16 C 1.38977 * 120.08683 * 88.24188 * 15 14 12 17 17 F 1.35102 * 120.03560 * 359.70222 * 16 15 14 18 18 C 1.38338 * 119.91539 * 179.97438 * 16 15 14 19 19 C 1.38262 * 120.08856 * 0.02562 * 18 16 15 20 20 C 1.38267 * 120.16580 * 359.95918 * 19 18 16 21 21 C 1.38336 * 120.08625 * 0.03832 * 20 19 18 22 22 F 1.35101 * 120.04468 * 180.02562 * 21 20 19 23 23 H 0.96999 * 119.99945 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46981 * 60.00533 * 9 7 2 25 25 H 1.08994 * 109.47072 * 300.00001 * 9 7 2 26 26 H 1.09002 * 109.46601 * 60.00011 * 10 9 7 27 27 H 1.09000 * 109.47072 * 300.00276 * 10 9 7 28 28 H 0.96994 * 120.00058 * 0.02562 * 11 10 9 29 29 H 0.97006 * 120.00169 * 5.11447 * 14 12 11 30 30 H 1.08004 * 119.95605 * 179.97438 * 18 16 15 31 31 H 1.07996 * 119.92008 * 179.97438 * 19 18 16 32 32 H 1.08006 * 119.95865 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5126 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0027 13 8 3.4024 -6.0981 -0.0040 14 7 1.5127 -7.2652 -0.0026 15 6 2.2096 -8.4771 0.1041 16 6 2.4964 -9.0080 1.3561 17 9 2.1091 -8.3538 2.4729 18 6 3.1838 -10.2043 1.4572 19 6 3.5859 -10.8714 0.3149 20 6 3.3022 -10.3466 -0.9324 21 6 2.6152 -9.1509 -1.0418 22 9 2.3380 -8.6391 -2.2610 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.8725 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.5427 -4.9308 -0.0005 29 1 0.5454 -7.2668 -0.0764 30 1 3.4073 -10.6172 2.4298 31 1 4.1227 -11.8049 0.3971 32 1 3.6175 -10.8707 -1.8226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273099073.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:30 Heat of formation + Delta-G solvation = -97.574852 kcal Electronic energy + Delta-G solvation = -19740.170980 eV Core-core repulsion = 16143.745043 eV Total energy + Delta-G solvation = -3596.425937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.14015 -49.11593 -40.10292 -38.65715 -35.21352 -34.50406 -32.84051 -30.60713 -30.28450 -28.87699 -24.88290 -23.14407 -23.13198 -21.14558 -20.72441 -18.58093 -18.34102 -17.50944 -17.44597 -16.33400 -15.96322 -15.82724 -15.42445 -15.32295 -15.01215 -14.57575 -14.51528 -14.36886 -13.63258 -13.28566 -12.97760 -12.32858 -12.29190 -12.21755 -12.06603 -11.20172 -11.01800 -10.64819 -10.33628 -10.11290 -9.61020 -9.50804 -9.30395 -9.16846 -9.02645 -8.52751 -8.33153 -6.08371 -4.11193 0.61961 0.69788 2.73219 3.08148 3.32585 3.36145 3.39148 3.39857 3.58620 4.15112 4.37111 4.39995 4.54052 4.60132 4.79830 5.21592 5.28711 5.55929 5.56545 5.69739 5.83089 6.18324 6.23459 6.37699 6.68728 6.75911 6.91480 7.01245 7.55025 7.62902 7.90241 8.20122 8.32780 8.83601 8.94885 9.53470 11.03292 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.003481 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.707838 B = 8042.241346 C = 8304.619080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.730 5.730 12 C 0.703 3.297 13 O -0.584 6.584 14 N -0.704 5.704 15 C 0.093 3.907 16 C 0.137 3.863 17 F -0.122 7.122 18 C -0.163 4.163 19 C -0.059 4.059 20 C -0.163 4.163 21 C 0.139 3.861 22 F -0.122 7.122 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.396 0.604 29 H 0.408 0.592 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -23.795 0.545 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.383 5.383 12 C 0.404 3.596 13 O -0.460 6.460 14 N -0.360 5.360 15 C -0.002 4.002 16 C 0.116 3.884 17 F -0.100 7.100 18 C -0.182 4.182 19 C -0.077 4.077 20 C -0.182 4.182 21 C 0.117 3.883 22 F -0.101 7.101 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.229 0.771 29 H 0.245 0.755 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.042 -23.507 0.553 23.710 hybrid contribution -0.669 1.200 -0.060 1.375 sum 2.373 -22.307 0.493 22.439 Atomic orbital electron populations 1.69945 1.06098 1.26996 1.50306 1.24993 0.94900 0.99410 0.94962 0.86557 0.79502 0.82579 0.78804 1.20085 1.21251 1.20090 1.21008 0.93253 0.90321 1.51484 0.92233 1.19329 0.94228 0.90958 0.97903 1.21675 0.95741 0.80054 1.00863 1.45497 1.10043 1.04982 1.77823 1.16038 0.85603 0.80158 0.77804 1.90917 1.11521 1.86227 1.57382 1.42325 1.09759 1.02343 1.81584 1.17168 1.03206 0.89026 0.90824 1.17777 0.97301 0.91691 0.81658 1.91552 1.88601 1.80467 1.49430 1.21159 1.01354 0.94673 1.01031 1.20880 0.96935 0.99498 0.90428 1.21162 1.01752 0.95432 0.99899 1.17765 0.97665 0.93099 0.79758 1.91547 1.91341 1.86726 1.40446 0.92784 0.95887 0.95869 0.92563 0.92561 0.77102 0.75510 0.83643 0.83649 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.04 16 11 N -0.73 -13.45 5.56 -65.22 -0.36 -13.81 16 12 C 0.70 13.17 8.53 -86.92 -0.74 12.43 16 13 O -0.58 -13.28 16.32 5.29 0.09 -13.19 16 14 N -0.70 -10.14 4.93 -14.10 -0.07 -10.21 16 15 C 0.09 1.26 5.30 -83.48 -0.44 0.82 16 16 C 0.14 1.68 7.31 -39.27 -0.29 1.40 16 17 F -0.12 -1.70 17.08 2.25 0.04 -1.66 16 18 C -0.16 -1.41 10.02 -39.54 -0.40 -1.81 16 19 C -0.06 -0.42 10.04 -39.56 -0.40 -0.81 16 20 C -0.16 -1.41 10.02 -39.53 -0.40 -1.81 16 21 C 0.14 1.70 7.31 -39.27 -0.29 1.41 16 22 F -0.12 -1.68 17.08 2.25 0.04 -1.65 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.40 6.17 8.49 -40.82 -0.35 5.83 16 29 H 0.41 4.51 8.84 -40.82 -0.36 4.15 16 30 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 299.04 15.07 4.51 4.51 Total: -1.00 -34.13 299.04 -6.78 -40.90 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.21 Total: 2.67 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -3.52 Total: 1.47 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.30 Total: -49.61 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.13 -6.78 -40.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273099073.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.672 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds