Wall clock time and date at job start Mon Mar 30 2020 01:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48507 * 109.47320 * 240.00299 * 3 2 1 5 5 H 1.48502 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47262 * 120.00403 * 3 2 1 7 7 C 1.37879 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46867 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46945 * 179.97438 * 10 9 7 12 12 C 1.34783 * 119.99596 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00246 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99679 * 180.02562 * 12 11 10 15 15 C 1.40213 * 119.99995 * 185.11363 * 14 12 11 16 16 C 1.38977 * 120.08683 * 88.24188 * 15 14 12 17 17 F 1.35102 * 120.03560 * 359.70222 * 16 15 14 18 18 C 1.38338 * 119.91539 * 179.97438 * 16 15 14 19 19 C 1.38262 * 120.08856 * 0.02562 * 18 16 15 20 20 C 1.38267 * 120.16580 * 359.95918 * 19 18 16 21 21 C 1.38336 * 120.08625 * 0.03832 * 20 19 18 22 22 F 1.35101 * 120.04468 * 180.02562 * 21 20 19 23 23 H 0.96999 * 119.99945 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46981 * 60.00533 * 9 7 2 25 25 H 1.08994 * 109.47072 * 300.00001 * 9 7 2 26 26 H 1.09002 * 109.46601 * 60.00011 * 10 9 7 27 27 H 1.09000 * 109.47072 * 300.00276 * 10 9 7 28 28 H 0.96994 * 120.00058 * 0.02562 * 11 10 9 29 29 H 0.97006 * 120.00169 * 5.11447 * 14 12 11 30 30 H 1.08004 * 119.95605 * 179.97438 * 18 16 15 31 31 H 1.07996 * 119.92008 * 179.97438 * 19 18 16 32 32 H 1.08006 * 119.95865 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5126 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0027 13 8 3.4024 -6.0981 -0.0040 14 7 1.5127 -7.2652 -0.0026 15 6 2.2096 -8.4771 0.1041 16 6 2.4964 -9.0080 1.3561 17 9 2.1091 -8.3538 2.4729 18 6 3.1838 -10.2043 1.4572 19 6 3.5859 -10.8714 0.3149 20 6 3.3022 -10.3466 -0.9324 21 6 2.6152 -9.1509 -1.0418 22 9 2.3380 -8.6391 -2.2610 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.8725 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8922 28 1 0.5427 -4.9308 -0.0005 29 1 0.5454 -7.2668 -0.0764 30 1 3.4073 -10.6172 2.4298 31 1 4.1227 -11.8049 0.3971 32 1 3.6175 -10.8707 -1.8226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273099073.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:30 Heat of formation + Delta-G solvation = -121.120408 kcal Electronic energy + Delta-G solvation = -19741.191991 eV Core-core repulsion = 16143.745043 eV Total energy + Delta-G solvation = -3597.446949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.09521 -50.06785 -41.42876 -39.62399 -36.80465 -35.90526 -34.85230 -31.86471 -31.36467 -30.20560 -26.79050 -24.26030 -23.93960 -22.90126 -22.19725 -19.89804 -19.39666 -18.55482 -18.42015 -18.38282 -16.95826 -16.74679 -16.57972 -16.51503 -16.38727 -16.37209 -15.70664 -15.34129 -15.26211 -15.04302 -14.29472 -13.84952 -13.25881 -13.15302 -13.00660 -12.93041 -12.82587 -12.55015 -12.27494 -11.80376 -11.59460 -11.35655 -10.80780 -10.60786 -10.04442 -10.01205 -9.81487 -8.25096 -6.35864 -0.19180 -0.07537 1.40793 1.44241 1.48585 1.53862 1.90704 2.31835 2.40391 2.75057 3.09702 3.14800 3.36693 3.77588 3.84652 4.17470 4.33230 4.43828 4.46117 4.74751 4.80915 4.94792 5.01138 5.15839 5.19887 5.30940 5.43775 5.55536 5.69497 5.78385 5.79751 6.14169 6.76434 6.87739 7.33283 7.37812 8.86754 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038310 B = 0.003481 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.707838 B = 8042.241346 C = 8304.619080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.725 5.725 12 C 0.704 3.296 13 O -0.626 6.626 14 N -0.688 5.688 15 C 0.057 3.943 16 C 0.109 3.891 17 F -0.140 7.140 18 C -0.151 4.151 19 C -0.039 4.039 20 C -0.151 4.151 21 C 0.111 3.889 22 F -0.139 7.139 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.409 0.591 29 H 0.421 0.579 30 H 0.175 0.825 31 H 0.195 0.805 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -25.658 0.681 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.380 5.380 12 C 0.404 3.596 13 O -0.506 6.506 14 N -0.344 5.344 15 C -0.038 4.038 16 C 0.088 3.912 17 F -0.118 7.118 18 C -0.170 4.170 19 C -0.056 4.056 20 C -0.170 4.170 21 C 0.090 3.910 22 F -0.118 7.118 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.245 0.755 29 H 0.261 0.739 30 H 0.192 0.808 31 H 0.212 0.788 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.109 -25.421 0.688 25.761 hybrid contribution -1.010 1.617 -0.096 1.909 sum 3.099 -23.804 0.592 24.012 Atomic orbital electron populations 1.70052 1.07568 1.28131 1.50846 1.25882 0.95818 1.03138 0.94303 0.85475 0.78290 0.77978 0.79168 1.19291 1.20506 1.19304 1.21428 0.93644 0.91828 1.51835 0.92212 1.19128 0.94179 0.91508 0.96473 1.21165 0.94754 0.80677 0.99832 1.45184 1.10594 1.04144 1.78043 1.16133 0.85138 0.80962 0.77318 1.90872 1.13447 1.86993 1.59310 1.42053 1.10455 1.01735 1.80171 1.17535 1.05269 0.88842 0.92158 1.18152 0.99058 0.93295 0.80707 1.91502 1.89077 1.81140 1.50111 1.21605 0.99256 0.92937 1.03224 1.21473 0.95047 1.00312 0.88791 1.21611 0.99655 0.93763 1.01988 1.18134 0.99379 0.94721 0.78781 1.91499 1.91749 1.87251 1.41276 0.92484 0.97176 0.97200 0.93615 0.93567 0.75483 0.73922 0.80785 0.78762 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 2 C 0.01 0.42 5.46 84.66 0.46 0.89 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.25 5.61 86.38 0.48 7.73 16 11 N -0.73 -27.45 5.56 -478.52 -2.66 -30.11 16 12 C 0.70 27.07 8.53 179.05 1.53 28.60 16 13 O -0.63 -29.28 16.32 -3.99 -0.07 -29.35 16 14 N -0.69 -20.30 4.93 -316.80 -1.56 -21.87 16 15 C 0.06 1.53 5.30 38.15 0.20 1.73 16 16 C 0.11 2.60 7.31 22.47 0.16 2.76 16 17 F -0.14 -3.91 17.08 44.97 0.77 -3.15 16 18 C -0.15 -2.17 10.02 22.30 0.22 -1.95 16 19 C -0.04 -0.37 10.04 22.28 0.22 -0.15 16 20 C -0.15 -2.15 10.02 22.30 0.22 -1.93 16 21 C 0.11 2.63 7.31 22.47 0.16 2.80 16 22 F -0.14 -3.85 17.08 44.97 0.77 -3.09 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.41 13.08 8.49 -92.71 -0.79 12.30 16 29 H 0.42 9.57 8.84 -92.70 -0.82 8.75 16 30 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.20 0.04 8.06 -2.91 -0.02 0.01 16 32 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -75.73 299.04 3.19 -72.54 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.43 Total: 12.64 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 4.06 Total: 10.88 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.94 Total: -106.66 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.07 Total: -29.35 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.54 Total: -6.23 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.73 3.19 -72.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273099073.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.583 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds