Wall clock time and date at job start Mon Mar 30 2020 01:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48504 * 109.46772 * 240.00111 * 3 2 1 5 5 H 1.48500 * 109.47333 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46789 * 120.00424 * 3 2 1 7 7 C 1.37872 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00345 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47074 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47012 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00365 * 180.02562 * 11 10 9 13 13 O 1.21591 * 119.99503 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00614 * 179.97438 * 12 11 10 15 15 C 1.40071 * 120.00227 * 185.63816 * 14 12 11 16 16 C 1.38776 * 120.06689 * 24.77846 * 15 14 12 17 17 C 1.38347 * 119.93496 * 179.97438 * 16 15 14 18 18 F 1.35096 * 119.97251 * 179.97438 * 17 16 15 19 19 C 1.38487 * 120.05520 * 0.02562 * 17 16 15 20 20 C 1.38260 * 120.13116 * 359.97438 * 19 17 16 21 21 C 1.38294 * 120.06631 * 0.02562 * 20 19 17 22 22 F 1.35100 * 120.02882 * 180.27461 * 21 20 19 23 23 H 0.97005 * 120.00030 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46835 * 59.99678 * 9 7 2 25 25 H 1.09000 * 109.47180 * 300.00673 * 9 7 2 26 26 H 1.08997 * 109.47156 * 60.00254 * 10 9 7 27 27 H 1.08995 * 109.47193 * 300.00179 * 10 9 7 28 28 H 0.97004 * 120.00084 * 359.97438 * 11 10 9 29 29 H 0.97002 * 119.99687 * 5.63182 * 14 12 11 30 30 H 1.08001 * 120.03154 * 359.95997 * 16 15 14 31 31 H 1.08005 * 119.93318 * 180.02562 * 19 17 16 32 32 H 1.08002 * 119.96420 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0007 13 8 3.4024 -6.0980 0.0006 14 7 1.5127 -7.2652 -0.0008 15 6 2.2080 -8.4753 0.1188 16 6 3.4521 -8.5046 0.7329 17 6 4.1362 -9.7014 0.8500 18 9 5.3476 -9.7307 1.4472 19 6 3.5806 -10.8692 0.3547 20 6 2.3412 -10.8429 -0.2576 21 6 1.6528 -9.6494 -0.3775 22 9 0.4394 -9.6255 -0.9710 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.5427 -4.9308 -0.0011 29 1 0.5462 -7.2672 -0.0836 30 1 3.8860 -7.5939 1.1188 31 1 4.1161 -11.8025 0.4475 32 1 1.9103 -11.7553 -0.6426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273232993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:32 Heat of formation + Delta-G solvation = -118.532082 kcal Electronic energy + Delta-G solvation = -19458.130327 eV Core-core repulsion = 15860.795616 eV Total energy + Delta-G solvation = -3597.334711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.98150 -49.96429 -41.78924 -39.54593 -36.82567 -35.93626 -34.88027 -32.03092 -31.25884 -30.15620 -26.81808 -24.78268 -23.66650 -22.87905 -22.16810 -20.03323 -19.22164 -18.59445 -18.42843 -17.83448 -17.25996 -17.00522 -16.66796 -16.50421 -16.38253 -15.96002 -15.43129 -15.30996 -15.21382 -14.86310 -14.28183 -14.11275 -13.66610 -13.31303 -13.24348 -12.93455 -12.64415 -12.54543 -12.27534 -11.76289 -11.66559 -11.49354 -11.19329 -10.61016 -10.19592 -9.84698 -9.20416 -8.24724 -6.35076 -0.15292 0.00390 1.33712 1.43348 1.44414 1.52807 1.83318 2.40232 2.41623 2.94046 3.03614 3.10540 3.24990 3.60901 3.94486 4.05901 4.31806 4.40596 4.48417 4.73612 4.83552 4.93750 5.02108 5.05020 5.17426 5.22164 5.45093 5.57164 5.71131 5.78057 5.80589 6.14764 6.77060 6.81439 7.28253 7.34436 8.86919 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.003323 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.759468 B = 8423.822989 C = 9147.062686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.158 3.842 11 N -0.721 5.721 12 C 0.700 3.300 13 O -0.609 6.609 14 N -0.671 5.671 15 C 0.159 3.841 16 C -0.168 4.168 17 C 0.102 3.898 18 F -0.141 7.141 19 C -0.135 4.135 20 C -0.084 4.084 21 C 0.049 3.951 22 F -0.134 7.134 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.411 0.589 29 H 0.426 0.574 30 H 0.141 0.859 31 H 0.180 0.820 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -23.583 0.219 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.034 3.966 11 N -0.375 5.375 12 C 0.401 3.599 13 O -0.489 6.489 14 N -0.318 5.318 15 C 0.061 3.939 16 C -0.190 4.190 17 C 0.082 3.918 18 F -0.120 7.120 19 C -0.155 4.155 20 C -0.103 4.103 21 C 0.027 3.973 22 F -0.112 7.112 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.247 0.753 29 H 0.265 0.735 30 H 0.158 0.842 31 H 0.197 0.803 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.355 -23.318 0.228 23.438 hybrid contribution -0.628 1.411 0.022 1.545 sum 1.727 -21.908 0.250 21.977 Atomic orbital electron populations 1.70046 1.07530 1.28085 1.50928 1.25853 0.95777 1.03060 0.94396 0.85512 0.78309 0.78174 0.79146 1.19337 1.20671 1.19336 1.21435 0.93678 0.91843 1.51672 0.92142 1.19139 0.94250 0.91535 0.96545 1.21201 0.94713 0.80408 1.00230 1.45268 1.10778 1.04160 1.77303 1.16040 0.85217 0.80839 0.77838 1.90869 1.12997 1.86587 1.58402 1.42384 1.11264 1.02451 1.75747 1.17358 0.93523 0.84560 0.98430 1.21196 0.95703 0.99261 1.02842 1.17682 0.81934 0.94453 0.97724 1.91500 1.41827 1.97251 1.81399 1.21290 0.96325 0.98001 0.99845 1.21186 0.93750 0.97098 0.98262 1.17459 0.84188 0.93762 1.01904 1.91501 1.40948 1.97179 1.81622 0.92530 0.97157 0.97137 0.93129 0.93244 0.75321 0.73502 0.84151 0.80289 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -30.14 9.11 25.60 0.23 -29.90 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.12 5.09 29.85 0.15 1.28 16 10 C 0.16 6.60 5.61 86.38 0.48 7.09 16 11 N -0.72 -24.16 5.56 -478.55 -2.66 -26.82 16 12 C 0.70 23.45 8.37 179.06 1.50 24.95 16 13 O -0.61 -24.82 13.51 -4.00 -0.05 -24.88 16 14 N -0.67 -17.08 5.32 -317.02 -1.69 -18.77 16 15 C 0.16 3.94 6.44 38.14 0.25 4.19 16 16 C -0.17 -4.62 8.70 22.42 0.20 -4.42 16 17 C 0.10 2.28 7.30 22.36 0.16 2.44 16 18 F -0.14 -3.45 17.26 44.97 0.78 -2.67 16 19 C -0.14 -1.92 10.02 22.33 0.22 -1.69 16 20 C -0.08 -1.09 10.02 22.29 0.22 -0.87 16 21 C 0.05 0.94 7.30 22.48 0.16 1.10 16 22 F -0.13 -2.52 16.81 44.97 0.76 -1.76 16 23 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.41 11.48 8.49 -92.71 -0.79 10.69 16 29 H 0.43 8.19 8.47 -92.71 -0.79 7.41 16 30 H 0.14 4.74 5.78 -2.91 -0.02 4.72 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -67.25 293.49 3.10 -64.15 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.39 Total: 13.94 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 4.05 Total: 5.07 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -4.06 Total: -99.07 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.53 Total: -4.43 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.25 3.10 -64.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273232993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.383 kcal (2) G-P(sol) polarization free energy of solvation -67.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds