Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99747 * 2 1 4 4 H 1.48503 * 109.47012 * 269.99775 * 3 2 1 5 5 H 1.48497 * 109.47248 * 29.99593 * 3 2 1 6 6 H 1.48497 * 109.47361 * 149.99874 * 3 2 1 7 7 C 1.37869 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00186 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00103 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00037 * 179.97438 * 11 10 9 13 13 O 1.21594 * 119.99908 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00096 * 179.97438 * 12 11 10 15 15 C 1.40077 * 120.00023 * 185.63387 * 14 12 11 16 16 C 1.38846 * 120.06575 * 24.78358 * 15 14 12 17 17 C 1.38136 * 120.00144 * 179.74649 * 16 15 14 18 18 C 1.38265 * 120.12758 * 0.55045 * 17 16 15 19 19 C 1.38463 * 120.12963 * 359.70268 * 18 17 16 20 20 F 1.35098 * 120.00349 * 179.97438 * 19 18 17 21 21 C 1.38517 * 119.99957 * 0.02562 * 19 18 17 22 22 F 1.35100 * 120.06675 * 180.02562 * 21 19 18 23 23 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47272 * 59.99182 * 9 7 2 25 25 H 1.09010 * 109.46777 * 300.00075 * 9 7 2 26 26 H 1.08998 * 109.47060 * 59.99157 * 10 9 7 27 27 H 1.09008 * 109.46483 * 299.99858 * 10 9 7 28 28 H 0.97002 * 120.00085 * 359.97438 * 11 10 9 29 29 H 0.96993 * 119.99885 * 5.36078 * 14 12 11 30 30 H 1.08007 * 119.99615 * 0.02562 * 16 15 14 31 31 H 1.07997 * 119.93532 * 180.24971 * 17 16 15 32 32 H 1.08003 * 119.93630 * 179.72162 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.1606 -3.8035 0.0014 13 8 5.5526 -4.8566 0.0022 14 7 7.5084 -3.8035 0.0008 15 6 8.2087 -5.0107 -0.1179 16 6 7.6115 -6.1040 -0.7310 17 6 8.3053 -7.2924 -0.8519 18 6 9.5905 -7.3995 -0.3533 19 6 10.1893 -6.3142 0.2637 20 9 11.4450 -6.4219 0.7505 21 6 9.5006 -5.1184 0.3829 22 9 10.0837 -4.0584 0.9843 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1501 -0.8892 27 1 3.6580 -3.1504 0.8908 28 1 5.9716 -1.7963 0.0006 29 1 7.9933 -2.9671 0.0786 30 1 6.6061 -6.0239 -1.1173 31 1 7.8412 -8.1409 -1.3326 32 1 10.1284 -8.3315 -0.4456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273295999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = -92.911342 kcal Electronic energy + Delta-G solvation = -19507.706980 eV Core-core repulsion = 15911.483269 eV Total energy + Delta-G solvation = -3596.223712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.67171 -48.75335 -40.69130 -38.62936 -35.43786 -34.77908 -32.90579 -30.66711 -30.51179 -29.24258 -25.18432 -23.46264 -23.01555 -20.95917 -20.93199 -18.88533 -18.33680 -17.73459 -17.00773 -16.89553 -16.50451 -15.96005 -15.55241 -15.16851 -15.00991 -14.81789 -14.43331 -14.17512 -13.99114 -13.76461 -13.05375 -12.67780 -12.64110 -12.23766 -11.93449 -11.57272 -11.33090 -10.79870 -10.47252 -10.37310 -10.04899 -9.90876 -9.40103 -8.97459 -8.85937 -8.66411 -8.32234 -6.16300 -4.17163 0.69052 0.77381 2.41151 2.94678 3.21226 3.29119 3.30099 3.36667 3.56782 4.11255 4.15482 4.32752 4.43520 4.51892 4.97528 5.09308 5.16501 5.47315 5.66590 5.82797 5.92512 6.05201 6.10750 6.13158 6.45831 6.55196 6.62991 6.72232 7.08265 7.14492 7.59465 7.90430 8.37364 8.48745 8.87599 9.43355 10.96617 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042984 B = 0.003328 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.251166 B = 8410.483961 C = 8967.298005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.022 4.022 10 C 0.146 3.854 11 N -0.730 5.730 12 C 0.701 3.299 13 O -0.571 6.571 14 N -0.685 5.685 15 C 0.180 3.820 16 C -0.118 4.118 17 C -0.075 4.075 18 C -0.155 4.155 19 C 0.089 3.911 20 F -0.129 7.129 21 C 0.021 3.979 22 F -0.130 7.130 23 H 0.265 0.735 24 H 0.023 0.977 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.396 0.604 29 H 0.411 0.589 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.902 -10.673 -1.771 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.024 3.976 11 N -0.383 5.383 12 C 0.401 3.599 13 O -0.448 6.448 14 N -0.331 5.331 15 C 0.081 3.919 16 C -0.138 4.138 17 C -0.094 4.094 18 C -0.175 4.175 19 C 0.068 3.932 20 F -0.108 7.108 21 C -0.002 4.002 22 F -0.108 7.108 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.247 0.753 30 H 0.184 0.816 31 H 0.162 0.838 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 20.102 -11.368 -1.725 23.158 hybrid contribution 1.222 2.032 0.334 2.395 sum 21.324 -9.336 -1.391 23.320 Atomic orbital electron populations 1.69898 1.06293 1.27141 1.50172 1.24993 0.94769 0.99157 0.94303 0.86751 0.80238 0.83547 0.78513 1.20200 1.21223 1.19124 1.20880 0.88469 0.94973 1.51953 0.90514 1.19812 0.98088 0.91130 0.96966 1.21521 0.73800 1.00368 1.01957 1.45606 1.09375 1.05991 1.77340 1.15948 0.80283 0.85442 0.78217 1.90886 1.67124 1.29997 1.56755 1.42653 1.05997 1.07987 1.76464 1.17347 0.89291 0.88133 0.97085 1.21609 1.02595 0.91196 0.98426 1.21028 0.92827 0.97913 0.97600 1.21048 0.96804 0.98041 1.01592 1.17336 0.81029 0.93645 1.01184 1.91523 1.36945 1.96451 1.85844 1.17252 0.93227 0.85033 1.04731 1.91493 1.83923 1.54073 1.81359 0.92469 0.95915 0.96338 0.91632 0.91657 0.77075 0.75312 0.81568 0.83830 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.48 16 7 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 2.78 5.61 -4.05 -0.02 2.75 16 11 N -0.73 -11.05 5.56 -65.23 -0.36 -11.42 16 12 C 0.70 10.71 8.37 -86.92 -0.73 9.98 16 13 O -0.57 -10.44 13.51 5.28 0.07 -10.37 16 14 N -0.68 -8.29 5.32 -14.17 -0.08 -8.36 16 15 C 0.18 2.19 6.44 -83.59 -0.54 1.65 16 16 C -0.12 -1.36 8.72 -39.39 -0.34 -1.71 16 17 C -0.07 -0.65 10.04 -39.61 -0.40 -1.05 16 18 C -0.15 -1.33 10.02 -39.49 -0.40 -1.72 16 19 C 0.09 0.96 7.30 -39.40 -0.29 0.67 16 20 F -0.13 -1.47 17.18 2.25 0.04 -1.43 16 21 C 0.02 0.25 7.31 -39.21 -0.29 -0.04 16 22 F -0.13 -1.58 16.73 2.25 0.04 -1.55 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.39 7.57 -51.92 -0.39 -0.01 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.40 4.87 8.49 -40.82 -0.35 4.53 16 29 H 0.41 3.89 8.48 -40.82 -0.35 3.55 16 30 H 0.17 2.20 5.79 -52.48 -0.30 1.90 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -31.32 289.80 -6.40 -37.72 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.04 Total: 3.95 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.55 Total: -2.76 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.34 Total: -45.81 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.32 -6.40 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273295999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.189 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds