Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99747 * 2 1 4 4 H 1.48503 * 109.47012 * 269.99775 * 3 2 1 5 5 H 1.48497 * 109.47248 * 29.99593 * 3 2 1 6 6 H 1.48497 * 109.47361 * 149.99874 * 3 2 1 7 7 C 1.37869 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00186 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00103 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00037 * 179.97438 * 11 10 9 13 13 O 1.21594 * 119.99908 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00096 * 179.97438 * 12 11 10 15 15 C 1.40077 * 120.00023 * 185.63387 * 14 12 11 16 16 C 1.38846 * 120.06575 * 24.78358 * 15 14 12 17 17 C 1.38136 * 120.00144 * 179.74649 * 16 15 14 18 18 C 1.38265 * 120.12758 * 0.55045 * 17 16 15 19 19 C 1.38463 * 120.12963 * 359.70268 * 18 17 16 20 20 F 1.35098 * 120.00349 * 179.97438 * 19 18 17 21 21 C 1.38517 * 119.99957 * 0.02562 * 19 18 17 22 22 F 1.35100 * 120.06675 * 180.02562 * 21 19 18 23 23 H 0.96996 * 120.00006 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47272 * 59.99182 * 9 7 2 25 25 H 1.09010 * 109.46777 * 300.00075 * 9 7 2 26 26 H 1.08998 * 109.47060 * 59.99157 * 10 9 7 27 27 H 1.09008 * 109.46483 * 299.99858 * 10 9 7 28 28 H 0.97002 * 120.00085 * 359.97438 * 11 10 9 29 29 H 0.96993 * 119.99885 * 5.36078 * 14 12 11 30 30 H 1.08007 * 119.99615 * 0.02562 * 16 15 14 31 31 H 1.07997 * 119.93532 * 180.24971 * 17 16 15 32 32 H 1.08003 * 119.93630 * 179.72162 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.1606 -3.8035 0.0014 13 8 5.5526 -4.8566 0.0022 14 7 7.5084 -3.8035 0.0008 15 6 8.2087 -5.0107 -0.1179 16 6 7.6115 -6.1040 -0.7310 17 6 8.3053 -7.2924 -0.8519 18 6 9.5905 -7.3995 -0.3533 19 6 10.1893 -6.3142 0.2637 20 9 11.4450 -6.4219 0.7505 21 6 9.5006 -5.1184 0.3829 22 9 10.0837 -4.0584 0.9843 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6798 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1501 -0.8892 27 1 3.6580 -3.1504 0.8908 28 1 5.9716 -1.7963 0.0006 29 1 7.9933 -2.9671 0.0786 30 1 6.6061 -6.0239 -1.1173 31 1 7.8412 -8.1409 -1.3326 32 1 10.1284 -8.3315 -0.4456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273295999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -114.375722 kcal Electronic energy + Delta-G solvation = -19508.637746 eV Core-core repulsion = 15911.483269 eV Total energy + Delta-G solvation = -3597.154477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.54433 -49.62988 -41.79698 -39.58978 -36.83968 -35.92278 -34.82437 -32.24132 -31.33665 -30.36554 -26.87252 -24.50647 -23.88584 -22.64991 -22.11922 -19.97288 -19.33716 -18.95343 -18.59129 -17.91589 -17.39837 -16.97416 -16.77650 -16.31159 -16.05723 -15.91401 -15.79885 -15.39322 -15.28686 -15.21615 -14.60458 -13.94206 -13.57953 -13.36168 -13.13078 -12.99663 -12.73185 -12.19323 -12.16943 -11.78479 -11.73258 -11.50818 -11.22062 -10.78288 -10.19000 -9.81040 -9.26185 -8.29365 -6.36486 -0.13197 -0.05582 1.31659 1.39938 1.42286 1.53060 1.86115 2.37135 2.45521 2.70934 3.03994 3.06078 3.30536 3.62780 3.77099 4.17638 4.25242 4.33966 4.44863 4.71394 4.75914 4.96462 5.00430 5.06919 5.19738 5.31226 5.40275 5.41607 5.63245 5.75281 5.77996 6.22915 6.70539 6.82423 7.27621 7.30617 8.87305 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042984 B = 0.003328 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.251166 B = 8410.483961 C = 8967.298005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.537 4.537 8 H 0.032 0.968 9 C -0.014 4.014 10 C 0.163 3.837 11 N -0.721 5.721 12 C 0.703 3.297 13 O -0.604 6.604 14 N -0.672 5.672 15 C 0.160 3.840 16 C -0.131 4.131 17 C -0.062 4.062 18 C -0.137 4.137 19 C 0.079 3.921 20 F -0.134 7.134 21 C 0.012 3.988 22 F -0.136 7.136 23 H 0.268 0.732 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.413 0.587 29 H 0.424 0.576 30 H 0.148 0.852 31 H 0.176 0.824 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.727 -10.599 -2.058 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.576 4.576 8 H 0.050 0.950 9 C -0.052 4.052 10 C 0.039 3.961 11 N -0.376 5.376 12 C 0.404 3.596 13 O -0.483 6.483 14 N -0.319 5.319 15 C 0.063 3.937 16 C -0.152 4.152 17 C -0.081 4.081 18 C -0.156 4.156 19 C 0.058 3.942 20 F -0.112 7.112 21 C -0.011 4.011 22 F -0.115 7.115 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.249 0.751 29 H 0.262 0.738 30 H 0.166 0.834 31 H 0.193 0.807 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 23.003 -11.294 -2.012 25.705 hybrid contribution 0.344 1.835 0.407 1.911 sum 23.347 -9.459 -1.605 25.242 Atomic orbital electron populations 1.70071 1.08568 1.28399 1.52037 1.26051 0.95646 1.03790 0.93778 0.85564 0.79659 0.77519 0.79275 1.19023 1.21487 1.16017 1.21242 0.91510 0.93444 1.51388 0.94953 1.19667 0.94417 0.92929 0.98171 1.21001 0.76073 0.98464 1.00553 1.45183 1.07786 1.07008 1.77583 1.15949 0.81141 0.84730 0.77819 1.90874 1.68179 1.31149 1.58108 1.42369 1.04752 1.08928 1.75858 1.17465 0.89644 0.88264 0.98376 1.21610 1.02182 0.92363 0.99058 1.21362 0.92623 0.97634 0.96459 1.21417 0.96453 0.98438 0.99311 1.17586 0.80975 0.93961 1.01676 1.91515 1.37239 1.96458 1.85998 1.17346 0.93203 0.85394 1.05149 1.91471 1.83986 1.54454 1.81547 0.92356 0.94542 0.94485 0.93013 0.93417 0.75073 0.73809 0.83429 0.80674 0.80469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 2 C 0.00 0.25 5.47 84.65 0.46 0.72 16 3 Si 0.96 41.43 27.47 68.60 1.88 43.31 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 7 C -0.54 -29.74 9.66 25.60 0.25 -29.50 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.59 4.16 29.85 0.12 -0.47 16 10 C 0.16 6.20 5.61 86.38 0.48 6.68 16 11 N -0.72 -20.92 5.56 -478.54 -2.66 -23.58 16 12 C 0.70 21.05 8.37 179.05 1.50 22.55 16 13 O -0.60 -22.26 13.51 -4.01 -0.05 -22.31 16 14 N -0.67 -15.57 5.32 -317.00 -1.69 -17.25 16 15 C 0.16 3.74 6.44 38.14 0.25 3.98 16 16 C -0.13 -2.89 8.72 22.39 0.20 -2.70 16 17 C -0.06 -0.91 10.04 22.25 0.22 -0.69 16 18 C -0.14 -1.89 10.02 22.33 0.22 -1.66 16 19 C 0.08 1.53 7.30 22.39 0.16 1.69 16 20 F -0.13 -2.77 17.18 44.97 0.77 -2.00 16 21 C 0.01 0.27 7.31 22.51 0.16 0.44 16 22 F -0.14 -3.17 16.73 44.97 0.75 -2.42 16 23 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 24 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 25 H 0.04 1.45 7.57 -2.38 -0.02 1.43 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.41 9.14 8.49 -92.71 -0.79 8.35 16 29 H 0.42 7.38 8.48 -92.71 -0.79 6.59 16 30 H 0.15 3.90 5.79 -2.91 -0.02 3.88 16 31 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -69.86 289.80 2.90 -66.96 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.44 Total: 14.36 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.03 Total: 1.04 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -4.05 Total: -98.95 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.53 Total: -4.42 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.88 Total: 43.31 kcal Total: -69.86 2.90 -66.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273295999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.413 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds