Wall clock time and date at job start Mon Mar 30 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47511 * 127.40679 * 3 2 1 5 5 C 1.36930 * 120.00497 * 264.61678 * 4 3 2 6 6 H 1.07994 * 120.00440 * 132.82365 * 5 4 3 7 7 C 1.38974 * 119.99389 * 313.09699 * 5 4 3 8 8 N 1.31419 * 119.99970 * 168.20144 * 7 5 4 9 9 Si 1.86801 * 120.00352 * 348.20002 * 7 5 4 10 10 H 1.48501 * 109.46949 * 95.04322 * 9 7 5 11 11 H 1.48497 * 109.47214 * 215.04188 * 9 7 5 12 12 H 1.48495 * 109.47080 * 335.04551 * 9 7 5 13 13 C 1.34782 * 119.99671 * 84.60385 * 4 3 2 14 14 O 1.21717 * 120.00046 * 354.72940 * 13 4 3 15 15 C 1.46702 * 120.00014 * 174.71956 * 13 4 3 16 16 C 1.40481 * 126.55029 * 352.66831 * 15 13 4 17 17 N 1.30959 * 108.76382 * 179.81311 * 16 15 13 18 18 N 1.39709 * 109.51152 * 0.45617 * 17 16 15 19 19 C 1.36371 * 133.18178 * 179.73890 * 18 17 16 20 20 C 1.35314 * 119.79752 * 180.02562 * 19 18 17 21 21 N 1.33239 * 121.26718 * 359.96072 * 20 19 18 22 22 C 1.31433 * 121.08150 * 0.02562 * 21 20 19 23 23 C 1.36848 * 107.97897 * 359.70932 * 18 17 16 24 24 H 4.40645 * 5.51334 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47309 * 7.41101 * 3 2 1 26 26 H 1.09004 * 109.47293 * 247.41410 * 3 2 1 27 27 H 0.96995 * 120.00308 * 179.97438 * 8 7 5 28 28 H 1.07998 * 125.61710 * 359.96637 * 16 15 13 29 29 H 1.07996 * 120.10334 * 0.02562 * 19 18 17 30 30 H 1.08002 * 119.36673 * 179.97438 * 20 19 18 31 31 H 1.08008 * 120.17684 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.8399 -1.0971 5 6 3.4674 0.2719 -2.2976 6 1 3.1102 0.7076 -3.2189 7 6 4.2609 -0.8686 -2.3301 8 7 4.3914 -1.5467 -3.4482 9 14 5.1419 -1.4379 -0.7844 10 1 4.3179 -2.4622 -0.0938 11 1 6.4559 -2.0245 -1.1512 12 1 5.3523 -0.2795 0.1205 13 6 3.2546 2.1712 -0.9249 14 8 2.8686 2.6888 0.1069 15 6 3.8512 2.9964 -1.9809 16 6 4.4689 2.5345 -3.1550 17 7 4.8742 3.5666 -3.8519 18 7 4.5548 4.7439 -3.1709 19 6 4.7525 6.0646 -3.4469 20 6 4.3225 7.0056 -2.5748 21 7 3.7046 6.6690 -1.4433 22 6 3.4918 5.4091 -1.1353 23 6 3.9196 4.4004 -2.0084 24 1 -1.0501 0.0000 0.0004 25 1 3.0098 -1.0183 -0.1326 26 1 3.0091 0.3955 0.9489 27 1 4.9454 -2.3425 -3.4710 28 1 4.5876 1.4989 -3.4377 29 1 5.2507 6.3587 -4.3589 30 1 4.4831 8.0496 -2.8002 31 1 2.9891 5.1528 -0.2144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302358096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:05 Heat of formation + Delta-G solvation = 144.867291 kcal Electronic energy + Delta-G solvation = -19925.081550 eV Core-core repulsion = 16789.857880 eV Total energy + Delta-G solvation = -3135.223670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.45202 -40.64206 -39.13560 -37.07175 -34.83146 -34.34285 -33.43149 -32.30397 -30.59835 -28.40539 -27.02012 -25.72100 -24.51300 -23.26633 -21.08712 -20.27555 -19.45697 -18.53391 -18.23344 -17.65872 -17.08306 -16.99243 -16.46436 -16.05543 -15.92246 -15.45172 -14.94698 -14.83645 -14.34344 -14.07890 -13.99543 -13.90125 -13.75779 -12.94957 -12.53906 -12.22300 -12.00163 -11.84264 -11.48087 -11.19050 -11.04760 -10.99192 -10.81249 -10.59823 -9.80979 -8.85932 -8.51081 -6.28490 -0.62872 -0.20741 1.00948 1.11740 1.24293 1.37195 1.44964 1.69870 1.95978 2.18303 2.20991 2.56409 2.73038 2.92174 3.18228 3.24347 3.35815 3.62770 3.91379 4.07996 4.19516 4.28945 4.39677 4.49818 4.55775 4.73090 5.08733 5.15676 5.32670 5.42672 5.56104 6.00511 6.15771 6.31316 6.55196 6.73577 6.89942 7.31249 7.69925 8.58941 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.007134 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.456939 B = 3924.161282 C = 4736.173352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.227 4.227 3 C 0.203 3.797 4 N -0.469 5.469 5 C -0.344 4.344 6 H 0.087 0.913 7 C 0.039 3.961 8 N -0.889 5.889 9 Si 0.919 3.081 10 H -0.255 1.255 11 H -0.278 1.278 12 H -0.260 1.260 13 C 0.564 3.436 14 O -0.609 6.609 15 C -0.278 4.278 16 C 0.125 3.875 17 N -0.338 5.338 18 N -0.254 5.254 19 C 0.065 3.935 20 C 0.029 3.971 21 N -0.449 5.449 22 C 0.149 3.851 23 C 0.072 3.928 24 H 0.256 0.744 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.284 0.716 28 H 0.225 0.775 29 H 0.220 0.780 30 H 0.235 0.765 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 10.784 1.291 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.228 4.228 3 C 0.082 3.918 4 N -0.189 5.189 5 C -0.472 4.472 6 H 0.104 0.896 7 C -0.167 4.167 8 N -0.524 5.524 9 Si 0.743 3.257 10 H -0.180 1.180 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.356 3.644 14 O -0.496 6.496 15 C -0.295 4.295 16 C -0.051 4.051 17 N -0.163 5.163 18 N -0.021 5.021 19 C -0.065 4.065 20 C -0.114 4.114 21 N -0.161 5.161 22 C -0.028 4.028 23 C -0.052 4.052 24 H 0.272 0.728 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.241 0.759 29 H 0.237 0.763 30 H 0.251 0.749 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.851 11.882 0.970 11.951 hybrid contribution 0.130 -1.871 0.426 1.923 sum 0.982 10.011 1.396 10.155 Atomic orbital electron populations 1.25682 0.96546 0.99419 0.99050 1.23904 0.95543 1.01633 1.01758 1.18666 0.85074 0.95839 0.92244 1.43416 1.57891 1.04988 1.12566 1.18953 1.31597 1.12261 0.84392 0.89575 1.25940 0.95737 0.95709 0.99356 1.69732 1.37511 1.16976 1.28215 0.86182 0.79050 0.79712 0.80751 1.18007 1.20442 1.18447 1.17334 0.79310 0.82327 0.85411 1.90598 1.55183 1.73469 1.30303 1.19719 1.17835 0.90471 1.01504 1.25664 0.89493 0.99773 0.90172 1.77688 1.29959 0.88283 1.20321 1.46683 1.34340 1.07502 1.13545 1.23552 1.01044 0.77385 1.04471 1.23241 0.97167 1.02124 0.88871 1.68284 1.11342 1.17954 1.18501 1.23086 0.95814 0.85384 0.98501 1.20483 0.98798 0.95412 0.90459 0.72807 0.89325 0.88859 0.90592 0.75946 0.76337 0.74909 0.79703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.66 19.25 74.32 1.43 -5.22 16 2 C -0.23 -9.61 13.61 31.12 0.42 -9.18 16 3 C 0.20 9.03 4.25 84.57 0.36 9.39 16 4 N -0.47 -22.68 2.02 -649.92 -1.31 -23.99 16 5 C -0.34 -17.39 6.66 84.07 0.56 -16.83 16 6 H 0.09 4.67 6.37 -2.91 -0.02 4.65 16 7 C 0.04 1.94 5.33 84.93 0.45 2.39 16 8 N -0.89 -46.40 13.96 21.67 0.30 -46.10 16 9 Si 0.92 39.35 24.84 68.60 1.70 41.05 16 10 H -0.25 -10.23 6.85 99.48 0.68 -9.55 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.26 -11.30 7.04 99.48 0.70 -10.60 16 13 C 0.56 27.27 7.54 86.45 0.65 27.92 16 14 O -0.61 -30.26 15.56 -4.40 -0.07 -30.32 16 15 C -0.28 -12.37 6.03 -19.95 -0.12 -12.49 16 16 C 0.13 5.46 10.09 85.37 0.86 6.32 16 17 N -0.34 -13.29 12.60 -56.55 -0.71 -14.00 16 18 N -0.25 -8.57 3.91 -187.10 -0.73 -9.30 16 19 C 0.06 1.41 11.25 83.31 0.94 2.34 16 20 C 0.03 0.54 11.07 83.80 0.93 1.47 16 21 N -0.45 -12.03 10.44 -195.87 -2.05 -14.08 16 22 C 0.15 4.92 10.98 85.20 0.94 5.86 16 23 C 0.07 2.74 6.77 39.39 0.27 3.00 16 24 H 0.26 6.09 7.80 -4.41 -0.03 6.06 16 25 H 0.09 3.84 4.07 -2.39 -0.01 3.83 16 26 H 0.09 3.98 7.67 -2.38 -0.02 3.96 16 27 H 0.28 13.82 8.31 -92.71 -0.77 13.04 16 28 H 0.22 10.46 5.00 -2.91 -0.01 10.45 16 29 H 0.22 2.74 8.06 -2.91 -0.02 2.71 16 30 H 0.23 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.19 6.23 7.24 -2.91 -0.02 6.21 16 Total: -1.00 -66.15 279.74 5.98 -60.17 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 1.16 Total: 21.61 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 7.69 Total: 14.96 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -4.50 Total: -107.47 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.07 Total: -30.32 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.70 Total: 41.05 kcal Total: -66.15 5.98 -60.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302358096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.037 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds