Wall clock time and date at job start Mon Mar 30 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.46972 * 2 1 4 4 C 1.37104 * 119.99845 * 264.76961 * 3 2 1 5 5 H 1.07998 * 120.00442 * 138.85194 * 4 3 2 6 6 C 1.38946 * 119.99672 * 318.84813 * 4 3 2 7 7 N 1.31413 * 120.00781 * 341.83740 * 6 4 3 8 8 Si 1.86805 * 119.99785 * 161.83318 * 6 4 3 9 9 H 1.48505 * 109.46740 * 60.00299 * 8 6 4 10 10 H 1.48501 * 109.47051 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47397 * 300.00488 * 8 6 4 12 12 C 1.34776 * 120.00271 * 84.76889 * 3 2 1 13 13 O 1.21294 * 119.99982 * 179.97438 * 12 3 2 14 14 C 1.50696 * 120.00273 * 0.02562 * 12 3 2 15 15 C 1.50693 * 109.47616 * 179.97438 * 14 12 3 16 16 N 1.29324 * 126.06559 * 90.02367 * 15 14 12 17 17 N 1.26102 * 117.96701 * 180.02562 * 16 15 14 18 18 C 1.30239 * 117.62374 * 359.97438 * 17 16 15 19 19 N 1.38704 * 126.16989 * 179.97438 * 18 17 16 20 20 C 1.46500 * 119.99569 * 0.03772 * 19 18 17 21 21 S 1.76483 * 126.06668 * 269.71853 * 15 14 12 22 22 H 1.09008 * 109.46728 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46900 * 300.00027 * 1 2 3 24 24 H 1.08995 * 109.46880 * 60.00281 * 1 2 3 25 25 H 1.08995 * 109.46984 * 239.99462 * 2 1 3 26 26 H 1.09005 * 109.46719 * 119.99781 * 2 1 3 27 27 H 0.97000 * 120.00701 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47028 * 59.99600 * 14 12 3 29 29 H 1.09000 * 109.46847 * 299.99940 * 14 12 3 30 30 H 0.96997 * 120.00045 * 180.02562 * 19 18 17 31 31 H 1.09004 * 109.46892 * 179.97438 * 20 19 18 32 32 H 1.08999 * 109.47123 * 299.98941 * 20 19 18 33 33 H 1.08996 * 109.47866 * 59.99209 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0743 3.0217 -1.3537 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0500 1.9004 -3.9239 9 1 3.6537 3.2564 -3.9699 10 1 3.8482 0.9738 -4.7662 11 1 1.6580 1.9606 -4.4374 12 6 2.1426 2.0520 1.1623 13 8 2.5473 3.1954 1.1623 14 6 1.7799 1.3812 2.4620 15 6 2.0083 2.3391 3.6027 16 7 1.1420 3.1698 4.0844 17 7 1.4982 3.9048 5.0452 18 6 2.7169 3.7744 5.4857 19 7 3.2917 4.4880 6.5269 20 6 2.5088 5.4990 7.2419 21 16 3.5030 2.5212 4.5231 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.1593 -0.3123 -2.5280 28 1 2.4020 0.4969 2.6005 29 1 0.7305 1.0872 2.4386 30 1 4.2120 4.3177 6.7817 31 1 3.1233 5.9505 8.0208 32 1 2.1846 6.2693 6.5422 33 1 1.6358 5.0291 7.6950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309633508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:49 Heat of formation + Delta-G solvation = 38.949453 kcal Electronic energy + Delta-G solvation = -18294.199963 eV Core-core repulsion = 15289.827302 eV Total energy + Delta-G solvation = -3004.372661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52767 -38.53969 -36.25464 -34.97719 -32.41622 -31.57407 -29.42949 -28.57339 -26.77890 -25.01228 -23.79840 -22.25445 -19.87058 -19.42098 -18.47810 -17.05272 -16.81254 -16.11031 -15.39185 -15.19508 -14.94186 -14.26091 -14.01674 -13.71315 -13.32007 -12.93853 -12.80751 -12.58811 -12.43141 -12.06416 -11.73208 -11.29381 -11.04321 -10.99178 -10.72941 -10.38553 -10.34731 -10.11324 -10.10065 -9.67930 -9.21275 -8.91236 -8.48648 -7.91067 -7.42780 -6.32123 -4.00308 0.90511 1.05754 1.65771 3.06795 3.13410 3.21338 3.26379 3.30706 3.88992 4.16566 4.58434 4.93450 4.95189 5.02612 5.14305 5.33937 5.50230 5.61977 5.72229 5.80446 5.94726 6.10065 6.22949 6.36458 6.52516 6.65902 6.88880 7.08978 7.21442 7.59268 8.29455 8.51122 9.12848 9.18963 9.38023 9.99624 10.73079 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.004615 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.810466 B = 6065.430891 C = 6360.791290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.438 5.438 4 C -0.307 4.307 5 H 0.088 0.912 6 C 0.040 3.960 7 N -0.872 5.872 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.468 3.532 13 O -0.570 6.570 14 C -0.058 4.058 15 C 0.062 3.938 16 N -0.231 5.231 17 N -0.338 5.338 18 C 0.283 3.717 19 N -0.694 5.694 20 C 0.103 3.897 21 S 0.034 5.966 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.268 0.732 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 -0.024 13.795 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.158 5.158 4 C -0.435 4.435 5 H 0.106 0.894 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.253 3.747 13 O -0.452 6.452 14 C -0.103 4.103 15 C -0.224 4.224 16 N -0.064 5.064 17 N -0.184 5.184 18 C -0.089 4.089 19 N -0.335 5.335 20 C -0.043 4.043 21 S 0.272 5.728 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.252 0.748 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.649 0.670 13.795 13.826 hybrid contribution 0.556 0.077 -0.779 0.961 sum -0.092 0.747 13.015 13.037 Atomic orbital electron populations 1.22245 0.98034 1.00488 1.01796 1.21510 0.91785 0.85471 1.03579 1.43392 1.56127 1.11788 1.04488 1.19344 1.34885 0.98640 0.90646 0.89443 1.25412 0.93960 0.96536 1.00546 1.69909 1.29424 1.17512 1.34117 0.86128 0.78416 0.78841 0.82090 1.19750 1.20976 1.19830 1.19991 0.82456 0.88067 0.84145 1.90562 1.49659 1.18442 1.86534 1.20310 1.04785 0.95629 0.89574 1.28632 0.89114 1.02270 1.02364 1.70643 1.28292 1.02570 1.04902 1.71272 1.11188 1.23949 1.11998 1.26709 0.92468 0.95367 0.94397 1.43433 1.15367 1.41113 1.33564 1.21614 0.96228 0.90551 0.95921 1.85712 1.19464 1.36830 1.30782 0.92964 0.93663 0.92284 0.87697 0.93291 0.92200 0.87720 0.86856 0.74792 0.90366 0.92051 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.15 37.16 0.38 -2.54 16 2 C 0.10 2.10 5.41 -4.04 -0.02 2.08 16 3 N -0.44 -10.98 2.50 -114.82 -0.29 -11.26 16 4 C -0.31 -8.49 8.84 -14.93 -0.13 -8.63 16 5 H 0.09 2.55 7.82 -52.49 -0.41 2.14 16 6 C 0.04 1.05 4.95 -17.47 -0.09 0.96 16 7 N -0.87 -23.21 11.61 55.50 0.64 -22.56 16 8 Si 0.92 20.60 29.59 -169.99 -5.03 15.57 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.47 11.52 7.59 -10.99 -0.08 11.44 16 13 O -0.57 -16.33 15.95 5.55 0.09 -16.24 16 14 C -0.06 -1.11 4.93 -29.04 -0.14 -1.25 16 15 C 0.06 1.20 6.28 -13.34 -0.08 1.12 16 16 N -0.23 -4.79 11.55 33.57 0.39 -4.40 16 17 N -0.34 -6.43 11.24 31.00 0.35 -6.08 16 18 C 0.28 4.47 8.51 -87.14 -0.74 3.73 16 19 N -0.69 -7.63 5.87 -67.42 -0.40 -8.02 16 20 C 0.10 0.90 11.04 59.85 0.66 1.56 16 21 S 0.03 0.56 23.54 -107.50 -2.53 -1.97 16 22 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 23 H 0.04 0.74 6.60 -51.93 -0.34 0.40 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.11 2.42 5.76 -51.93 -0.30 2.12 16 26 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.10 1.72 7.41 -51.93 -0.38 1.33 16 29 H 0.11 1.92 6.54 -51.93 -0.34 1.58 16 30 H 0.42 3.30 8.95 -40.82 -0.37 2.94 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -34.17 299.62 -6.25 -40.42 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.74 Total: 1.56 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.25 Total: 8.47 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.70 Total: -52.33 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.09 Total: -16.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -2.53 Total: -1.97 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.17 -6.25 -40.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309633508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.370 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds