Wall clock time and date at job start Mon Mar 30 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.46972 * 2 1 4 4 C 1.37104 * 119.99845 * 264.76961 * 3 2 1 5 5 H 1.07998 * 120.00442 * 138.85194 * 4 3 2 6 6 C 1.38946 * 119.99672 * 318.84813 * 4 3 2 7 7 N 1.31413 * 120.00781 * 341.83740 * 6 4 3 8 8 Si 1.86805 * 119.99785 * 161.83318 * 6 4 3 9 9 H 1.48505 * 109.46740 * 60.00299 * 8 6 4 10 10 H 1.48501 * 109.47051 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47397 * 300.00488 * 8 6 4 12 12 C 1.34776 * 120.00271 * 84.76889 * 3 2 1 13 13 O 1.21294 * 119.99982 * 179.97438 * 12 3 2 14 14 C 1.50696 * 120.00273 * 0.02562 * 12 3 2 15 15 C 1.50693 * 109.47616 * 179.97438 * 14 12 3 16 16 N 1.29324 * 126.06559 * 90.02367 * 15 14 12 17 17 N 1.26102 * 117.96701 * 180.02562 * 16 15 14 18 18 C 1.30239 * 117.62374 * 359.97438 * 17 16 15 19 19 N 1.38704 * 126.16989 * 179.97438 * 18 17 16 20 20 C 1.46500 * 119.99569 * 0.03772 * 19 18 17 21 21 S 1.76483 * 126.06668 * 269.71853 * 15 14 12 22 22 H 1.09008 * 109.46728 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46900 * 300.00027 * 1 2 3 24 24 H 1.08995 * 109.46880 * 60.00281 * 1 2 3 25 25 H 1.08995 * 109.46984 * 239.99462 * 2 1 3 26 26 H 1.09005 * 109.46719 * 119.99781 * 2 1 3 27 27 H 0.97000 * 120.00701 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47028 * 59.99600 * 14 12 3 29 29 H 1.09000 * 109.46847 * 299.99940 * 14 12 3 30 30 H 0.96997 * 120.00045 * 180.02562 * 19 18 17 31 31 H 1.09004 * 109.46892 * 179.97438 * 20 19 18 32 32 H 1.08999 * 109.47123 * 299.98941 * 20 19 18 33 33 H 1.08996 * 109.47866 * 59.99209 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0743 3.0217 -1.3537 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0500 1.9004 -3.9239 9 1 3.6537 3.2564 -3.9699 10 1 3.8482 0.9738 -4.7662 11 1 1.6580 1.9606 -4.4374 12 6 2.1426 2.0520 1.1623 13 8 2.5473 3.1954 1.1623 14 6 1.7799 1.3812 2.4620 15 6 2.0083 2.3391 3.6027 16 7 1.1420 3.1698 4.0844 17 7 1.4982 3.9048 5.0452 18 6 2.7169 3.7744 5.4857 19 7 3.2917 4.4880 6.5269 20 6 2.5088 5.4990 7.2419 21 16 3.5030 2.5212 4.5231 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.1593 -0.3123 -2.5280 28 1 2.4020 0.4969 2.6005 29 1 0.7305 1.0872 2.4386 30 1 4.2120 4.3177 6.7817 31 1 3.1233 5.9505 8.0208 32 1 2.1846 6.2693 6.5422 33 1 1.6358 5.0291 7.6950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309633508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:49 Heat of formation + Delta-G solvation = 14.298771 kcal Electronic energy + Delta-G solvation = -18295.268896 eV Core-core repulsion = 15289.827302 eV Total energy + Delta-G solvation = -3005.441595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.89285 -40.38220 -37.33481 -36.85402 -34.22027 -33.17920 -31.11314 -29.89742 -27.94932 -26.74397 -25.19820 -23.87671 -21.44894 -20.71432 -19.95972 -18.73544 -18.24011 -17.85613 -16.99635 -16.56755 -16.43560 -15.85765 -15.73718 -14.79872 -14.78339 -14.50864 -14.37787 -13.99488 -13.74885 -13.51799 -13.13527 -12.96109 -12.83378 -12.63296 -12.26388 -12.10441 -11.88219 -11.76358 -11.45615 -11.03749 -10.85637 -10.58417 -10.34832 -9.38361 -9.09427 -8.32292 -6.08556 -0.38324 -0.22399 0.31804 1.40907 1.42743 1.52234 1.70542 2.04547 2.10070 2.32029 3.02778 3.04856 3.36283 3.88875 4.01137 4.18898 4.33687 4.37513 4.48769 4.60274 4.67880 4.69760 4.92327 4.92418 5.10459 5.35743 5.48202 5.58317 5.60547 6.25697 6.28942 6.56509 7.19923 7.45864 7.78140 8.06834 8.71059 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.004615 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.810466 B = 6065.430891 C = 6360.791290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.449 5.449 4 C -0.342 4.342 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.887 5.887 8 Si 0.978 3.022 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.264 1.264 12 C 0.455 3.545 13 O -0.623 6.623 14 C -0.044 4.044 15 C 0.028 3.972 16 N -0.254 5.254 17 N -0.373 5.373 18 C 0.290 3.710 19 N -0.672 5.672 20 C 0.097 3.903 21 S 0.062 5.938 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.274 0.726 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.432 0.568 31 H 0.124 0.876 32 H 0.047 0.953 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -0.807 15.004 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.168 5.168 4 C -0.470 4.470 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.524 5.524 8 Si 0.802 3.198 9 H -0.207 1.207 10 H -0.194 1.194 11 H -0.189 1.189 12 C 0.243 3.757 13 O -0.509 6.509 14 C -0.088 4.088 15 C -0.258 4.258 16 N -0.087 5.087 17 N -0.220 5.220 18 C -0.084 4.084 19 N -0.314 5.314 20 C -0.048 4.048 21 S 0.300 5.700 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.272 0.728 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.258 -0.141 15.045 15.047 hybrid contribution 0.528 0.399 -1.023 1.218 sum 0.270 0.259 14.022 14.027 Atomic orbital electron populations 1.22147 0.95339 1.02709 1.01356 1.21667 0.93986 0.83174 1.03683 1.43677 1.55927 1.13142 1.04062 1.19260 1.36819 0.98124 0.92812 0.92503 1.26069 0.93045 0.96584 1.03632 1.69961 1.29168 1.17940 1.35321 0.85243 0.78860 0.77972 0.77740 1.20654 1.19405 1.18899 1.20851 0.81460 0.87597 0.85814 1.90510 1.51976 1.20816 1.87606 1.20178 1.06488 0.95759 0.86329 1.28653 0.90685 1.03027 1.03445 1.70569 1.29776 1.02874 1.05524 1.71187 1.12816 1.25092 1.12936 1.26989 0.91800 0.94959 0.94614 1.43766 1.16232 1.39838 1.31517 1.21873 0.97086 0.89537 0.96336 1.85453 1.17700 1.36886 1.29972 0.89324 0.92641 0.94197 0.89964 0.90675 0.91634 0.85009 0.84851 0.72787 0.85776 0.93382 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 10.15 71.98 0.73 -4.52 16 2 C 0.10 4.01 5.41 86.38 0.47 4.48 16 3 N -0.45 -22.84 2.50 -635.55 -1.59 -24.43 16 4 C -0.34 -19.49 8.84 84.04 0.74 -18.75 16 5 H 0.06 3.51 7.82 -2.91 -0.02 3.48 16 6 C 0.01 0.52 4.95 84.93 0.42 0.95 16 7 N -0.89 -47.09 11.61 21.66 0.25 -46.83 16 8 Si 0.98 42.47 29.59 68.60 2.03 44.50 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 C 0.46 22.81 7.59 87.66 0.66 23.47 16 13 O -0.62 -37.04 15.95 -3.07 -0.05 -37.09 16 14 C -0.04 -1.63 4.93 29.10 0.14 -1.48 16 15 C 0.03 1.10 6.28 88.48 0.56 1.65 16 16 N -0.25 -10.58 11.55 -47.72 -0.55 -11.13 16 17 N -0.37 -14.09 11.24 -55.84 -0.63 -14.72 16 18 C 0.29 8.80 8.51 179.13 1.52 10.33 16 19 N -0.67 -13.16 5.87 -367.22 -2.16 -15.32 16 20 C 0.10 1.44 11.04 127.77 1.41 2.85 16 21 S 0.06 1.95 23.54 -56.49 -1.33 0.62 16 22 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 23 H 0.05 1.73 6.60 -2.39 -0.02 1.71 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 3.77 5.76 -2.39 -0.01 3.75 16 26 H 0.07 2.63 6.66 -2.38 -0.02 2.61 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.13 4.08 7.41 -2.38 -0.02 4.06 16 29 H 0.13 4.33 6.54 -2.39 -0.02 4.31 16 30 H 0.43 5.51 8.95 -92.71 -0.83 4.68 16 31 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -77.10 299.62 2.96 -74.14 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.32 Total: 11.28 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.66 Total: 18.98 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.68 Total: -112.43 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.05 Total: -37.09 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.33 Total: 0.62 kcal Total: -77.10 2.96 -74.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309633508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.441 kcal (2) G-P(sol) polarization free energy of solvation -77.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds