Wall clock time and date at job start Mon Mar 30 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47364 * 2 1 4 4 H 1.09002 * 109.46927 * 304.99912 * 3 2 1 5 5 C 1.53001 * 109.47134 * 185.00004 * 3 2 1 6 6 O 1.42898 * 109.47248 * 304.99778 * 5 3 2 7 7 N 1.46503 * 109.47329 * 64.99739 * 3 2 1 8 8 C 1.38401 * 120.00367 * 204.72692 * 7 3 2 9 9 N 1.32750 * 119.43353 * 0.27283 * 8 7 3 10 10 C 1.31479 * 121.73703 * 179.97438 * 9 8 7 11 11 C 1.40791 * 120.39041 * 0.02562 * 10 9 8 12 12 C 1.41189 * 120.56444 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00018 * 335.70331 * 12 11 10 14 14 C 1.39871 * 119.99868 * 155.70965 * 12 11 10 15 15 N 1.30902 * 120.00001 * 343.20603 * 14 12 11 16 16 Si 1.86796 * 119.99605 * 163.20943 * 14 12 11 17 17 H 1.48493 * 109.47494 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47186 * 119.99962 * 16 14 12 19 19 H 1.48507 * 109.46809 * 239.99534 * 16 14 12 20 20 C 1.41286 * 118.86857 * 359.97438 * 11 10 9 21 21 C 1.36665 * 118.40207 * 359.75028 * 20 11 10 22 22 Cl 1.73602 * 120.26561 * 180.25926 * 21 20 11 23 23 H 1.08998 * 109.47460 * 60.00158 * 1 2 3 24 24 H 1.09005 * 109.47682 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47096 * 299.99950 * 1 2 3 26 26 H 1.08996 * 109.46986 * 239.99537 * 2 1 3 27 27 H 1.09000 * 109.46729 * 119.99948 * 2 1 3 28 28 H 1.09004 * 109.46908 * 65.00320 * 5 3 2 29 29 H 1.09002 * 109.46554 * 184.99999 * 5 3 2 30 30 H 0.96691 * 114.00091 * 179.97438 * 6 5 3 31 31 H 0.97006 * 119.99169 * 25.00133 * 7 3 2 32 32 H 1.07994 * 119.80103 * 179.97438 * 10 9 8 33 33 H 0.97001 * 120.00102 * 180.02562 * 15 14 12 34 34 H 1.07994 * 120.79943 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 4.1293 0.6403 0.9121 7 7 1.6524 2.0975 1.2518 8 6 1.5278 3.4750 1.3023 9 7 1.7567 4.1913 0.2084 10 6 1.6511 5.5018 0.2051 11 6 1.2877 6.1900 1.3784 12 6 1.1726 7.5972 1.3789 13 1 1.7142 8.1835 0.6515 14 6 0.3572 8.2318 2.3217 15 7 -0.5415 7.5433 2.9790 16 14 0.5507 10.0618 2.6427 17 1 1.6284 10.6049 1.7776 18 1 -0.7264 10.7556 2.3378 19 1 0.9041 10.2795 4.0686 20 6 1.0390 5.4483 2.5550 21 6 1.1573 4.0878 2.5029 22 17 0.8564 3.1286 3.9182 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3635 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.8499 1.0376 -1.0961 29 1 3.9355 2.4654 -0.0366 30 1 5.0950 0.5955 0.8937 31 1 1.4871 1.5660 2.0463 32 1 1.8450 6.0537 -0.7027 33 1 -1.1072 7.9835 3.6325 34 1 0.7579 5.9442 3.4722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310041549.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:19 Heat of formation + Delta-G solvation = -56.889277 kcal Electronic energy + Delta-G solvation = -18527.792820 eV Core-core repulsion = 15484.927822 eV Total energy + Delta-G solvation = -3042.864998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62946 -38.70991 -37.26364 -36.50335 -35.57856 -33.44444 -32.34438 -30.79683 -29.18808 -26.66429 -24.42138 -23.90377 -22.93344 -21.22469 -19.28099 -18.71491 -17.96081 -17.48901 -16.78779 -16.01238 -15.89507 -15.52488 -15.15901 -14.93092 -14.70931 -14.36351 -13.84455 -13.64133 -13.36483 -13.19448 -13.11993 -12.86451 -12.69564 -12.46344 -12.22437 -12.02974 -11.84521 -11.70881 -11.52112 -11.22719 -10.82072 -10.49249 -10.08654 -9.96386 -8.69221 -8.41293 -6.16889 0.67491 1.00453 1.43144 1.44846 1.53425 1.57796 2.23934 2.65261 2.75678 3.55444 3.67521 3.92723 4.09985 4.21087 4.34344 4.50146 4.57002 4.67685 4.77736 4.84629 4.90368 5.08435 5.09383 5.13332 5.22747 5.30134 5.41428 5.47332 5.81716 5.83172 6.36104 6.63773 6.78898 6.86742 6.92020 6.96752 7.73627 8.36220 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.005295 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.389321 B = 5286.745792 C = 5664.926393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.164 3.836 4 H 0.079 0.921 5 C 0.070 3.930 6 O -0.580 6.580 7 N -0.717 5.717 8 C 0.300 3.700 9 N -0.508 5.508 10 C 0.012 3.988 11 C 0.006 3.994 12 C -0.482 4.482 13 H 0.086 0.914 14 C 0.033 3.967 15 N -0.834 5.834 16 Si 0.982 3.018 17 H -0.255 1.255 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.102 4.102 21 C -0.120 4.120 22 Cl -0.090 7.090 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.389 0.611 31 H 0.400 0.600 32 H 0.149 0.851 33 H 0.287 0.713 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -9.427 -3.141 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.058 3.942 4 H 0.097 0.903 5 C -0.009 4.009 6 O -0.387 6.387 7 N -0.356 5.356 8 C 0.065 3.935 9 N -0.225 5.225 10 C -0.146 4.146 11 C 0.001 3.999 12 C -0.513 4.513 13 H 0.104 0.896 14 C -0.180 4.180 15 N -0.461 5.461 16 Si 0.803 3.197 17 H -0.178 1.178 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.129 4.129 21 C -0.152 4.152 22 Cl -0.061 7.061 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.237 0.763 31 H 0.237 0.763 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.821 -10.020 -3.653 11.329 hybrid contribution 0.090 1.290 1.400 1.906 sum 3.910 -8.731 -2.253 9.828 Atomic orbital electron populations 1.21733 0.95690 1.01856 1.01256 1.21621 0.95836 0.94337 1.03477 1.20918 0.92139 0.93689 0.87444 0.90312 1.22609 0.94736 0.93199 0.90355 1.86427 1.26386 1.71858 1.54036 1.43889 1.78028 1.00759 1.12907 1.17744 1.01061 0.86483 0.88188 1.66848 1.20366 1.08712 1.26549 1.22608 1.06450 0.88308 0.97236 1.18588 0.94876 0.95341 0.91113 1.19594 1.25109 0.91393 1.15196 0.89612 1.26706 0.92319 1.05327 0.93695 1.69863 1.15077 1.40417 1.20758 0.85148 0.79268 0.76325 0.78937 1.17819 1.19399 1.19416 1.21232 1.01490 0.90590 0.99594 1.21026 1.13771 0.92547 0.87892 1.98234 1.95104 1.72067 1.40742 0.93181 0.91111 0.94357 0.89127 0.91403 0.91269 0.95690 0.76275 0.76322 0.83409 0.90228 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.80 71.98 0.71 -2.87 16 2 C -0.11 -2.75 5.19 30.59 0.16 -2.59 16 3 C 0.16 4.96 2.36 44.99 0.11 5.07 16 4 H 0.08 2.62 7.52 -2.39 -0.02 2.61 16 5 C 0.07 1.92 6.86 71.98 0.49 2.42 16 6 O -0.58 -14.83 12.83 -148.98 -1.91 -16.74 16 7 N -0.72 -26.21 4.56 -324.22 -1.48 -27.69 16 8 C 0.30 13.35 7.46 133.32 0.99 14.34 16 9 N -0.51 -23.24 9.14 -191.08 -1.75 -24.99 16 10 C 0.01 0.58 10.97 85.37 0.94 1.52 16 11 C 0.01 0.34 5.59 -21.18 -0.12 0.22 16 12 C -0.48 -24.79 9.07 23.39 0.21 -24.58 16 13 H 0.09 4.17 7.90 -2.91 -0.02 4.15 16 14 C 0.03 1.63 5.18 85.23 0.44 2.07 16 15 N -0.83 -42.95 10.91 21.82 0.24 -42.71 16 16 Si 0.98 37.32 29.59 68.60 2.03 39.35 16 17 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 C -0.10 -5.28 8.52 22.65 0.19 -5.08 16 21 C -0.12 -5.61 6.32 22.28 0.14 -5.47 16 22 Cl -0.09 -3.58 27.56 -2.72 -0.07 -3.65 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.04 1.07 7.75 -2.39 -0.02 1.05 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.69 7.73 -2.39 -0.02 1.67 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.39 6.48 9.12 -74.06 -0.68 5.81 16 31 H 0.40 14.22 7.21 -92.70 -0.67 13.55 16 32 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 33 H 0.29 13.46 8.30 -92.71 -0.77 12.70 16 34 H 0.12 6.66 6.20 -2.91 -0.02 6.64 16 Total: -1.00 -58.43 303.72 1.11 -57.31 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.21 Total: 34.06 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.26 Total: -14.94 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -2.99 Total: -95.39 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.91 Total: -16.74 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.07 Total: -3.65 kcal Total: -58.43 1.11 -57.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310041549.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.423 kcal (2) G-P(sol) polarization free energy of solvation -58.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds