Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99769 * 2 1 4 4 C 1.53000 * 109.46832 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47205 * 65.84877 * 4 3 2 6 6 C 1.36936 * 119.99693 * 272.61240 * 5 4 3 7 7 H 1.08003 * 120.00410 * 324.45183 * 6 5 4 8 8 C 1.38815 * 119.99522 * 144.44692 * 6 5 4 9 9 N 1.31619 * 119.99723 * 155.99308 * 8 6 5 10 10 Si 1.86802 * 120.00062 * 335.99367 * 8 6 5 11 11 H 1.48501 * 109.46918 * 95.24986 * 10 8 6 12 12 H 1.48498 * 109.46752 * 215.24878 * 10 8 6 13 13 H 1.48490 * 109.47014 * 335.24895 * 10 8 6 14 14 C 1.46500 * 119.99951 * 92.61581 * 5 4 3 15 15 C 1.50699 * 109.46880 * 94.55605 * 14 5 4 16 16 C 1.38649 * 120.79699 * 97.34200 * 15 14 5 17 17 C 1.38192 * 119.17831 * 180.02562 * 16 15 14 18 18 N 1.31874 * 120.79562 * 0.02562 * 17 16 15 19 19 C 1.31846 * 121.74125 * 359.97438 * 18 17 16 20 20 C 1.38355 * 120.74341 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 120.43474 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.46617 * 300.00422 * 1 2 3 23 23 H 1.09004 * 109.47037 * 59.99478 * 1 2 3 24 24 H 1.08998 * 109.47306 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47140 * 60.00207 * 3 2 1 26 26 H 1.08995 * 109.47516 * 300.00179 * 3 2 1 27 27 H 1.09004 * 109.46934 * 305.84744 * 4 3 2 28 28 H 1.09001 * 109.47301 * 185.85122 * 4 3 2 29 29 H 0.97002 * 120.00179 * 180.02562 * 9 8 6 30 30 H 1.08993 * 109.47007 * 334.55627 * 14 5 4 31 31 H 1.08995 * 109.47231 * 214.55212 * 14 5 4 32 32 H 1.07999 * 120.40947 * 0.04177 * 16 15 14 33 33 H 1.07998 * 119.59832 * 179.72135 * 17 16 15 34 34 H 1.07996 * 119.63057 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9772 0.5830 -1.2613 6 6 4.0470 -0.7793 -1.3822 7 1 4.3467 -1.3818 -0.5375 8 6 3.7325 -1.3857 -2.5906 9 7 4.2239 -2.5721 -2.8791 10 14 2.6117 -0.5179 -3.8074 11 1 3.4348 0.2162 -4.8018 12 1 1.7689 -1.5211 -4.5063 13 1 1.7407 0.4408 -3.0812 14 6 4.3442 1.4386 -2.3923 15 6 5.8335 1.6686 -2.3857 16 6 6.6731 0.9056 -3.1827 17 6 8.0338 1.1446 -3.1500 18 7 8.5358 2.0843 -2.3728 19 6 7.7689 2.8294 -1.6015 20 6 6.3974 2.6481 -1.5810 21 17 5.3953 3.6333 -0.5618 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8505 0.5558 0.8322 28 1 3.9785 2.1751 0.1041 29 1 4.0045 -2.9958 -3.7236 30 1 3.8285 2.3950 -2.3067 31 1 4.0558 0.9525 -3.3243 32 1 6.2687 0.1343 -3.8214 33 1 8.6946 0.5513 -3.7647 34 1 8.2163 3.5893 -0.9780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316486060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = 17.947482 kcal Electronic energy + Delta-G solvation = -19190.102880 eV Core-core repulsion = 16150.483047 eV Total energy + Delta-G solvation = -3039.619832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83229 -37.46217 -36.41570 -35.78033 -32.44642 -31.71576 -30.61556 -28.97915 -26.32942 -25.81795 -23.52801 -23.01093 -22.07155 -20.21102 -17.28258 -16.49658 -16.02996 -15.85783 -15.59876 -15.37929 -14.97955 -14.37711 -14.24857 -13.57744 -13.45399 -13.05473 -12.81549 -12.35662 -12.14415 -11.95481 -11.63939 -11.36922 -11.24640 -11.01707 -10.72925 -10.55015 -10.13680 -10.02909 -9.59621 -9.22003 -9.04502 -8.94603 -8.56474 -8.50903 -6.98434 -6.00869 -3.36971 1.33766 1.60135 2.34691 3.23594 3.43986 3.49925 4.05181 4.49351 4.50425 4.73342 4.98210 5.06660 5.18420 5.36520 5.41498 5.63515 5.72205 5.76039 5.84918 5.92526 5.97374 6.04974 6.09672 6.12590 6.29082 6.32205 6.40469 6.73712 6.76776 6.95387 7.83727 8.01778 8.18679 8.34989 8.92661 9.67977 10.02542 11.14663 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.009187 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.654766 B = 3047.004531 C = 4147.195186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.043 3.957 4 C 0.134 3.866 5 N -0.582 5.582 6 C -0.242 4.242 7 H 0.082 0.918 8 C 0.040 3.960 9 N -0.895 5.895 10 Si 0.867 3.133 11 H -0.289 1.289 12 H -0.301 1.301 13 H -0.268 1.268 14 C 0.163 3.837 15 C -0.027 4.027 16 C -0.134 4.134 17 C 0.095 3.905 18 N -0.486 5.486 19 C 0.102 3.898 20 C -0.086 4.086 21 Cl -0.065 7.065 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.078 0.922 25 H 0.030 0.970 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 11.054 2.098 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.036 4.036 4 C 0.008 3.992 5 N -0.302 5.302 6 C -0.371 4.371 7 H 0.099 0.901 8 C -0.160 4.160 9 N -0.536 5.536 10 Si 0.698 3.302 11 H -0.217 1.217 12 H -0.230 1.230 13 H -0.192 1.192 14 C 0.037 3.963 15 C -0.039 4.039 16 C -0.155 4.155 17 C -0.061 4.061 18 N -0.196 5.196 19 C -0.056 4.056 20 C -0.115 4.115 21 Cl -0.036 7.036 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.019 10.922 2.110 11.171 hybrid contribution -2.040 0.418 -0.695 2.196 sum -1.021 11.340 1.415 11.474 Atomic orbital electron populations 1.22650 0.83650 1.01890 0.98486 1.88187 1.17160 1.27119 1.94856 1.23333 0.97720 0.84863 0.97687 1.21471 0.89618 0.98356 0.89752 1.44037 1.73370 1.03146 1.09659 1.18708 1.39406 0.79838 0.99129 0.90055 1.25313 0.97781 0.95165 0.97741 1.69886 1.43171 1.16903 1.23674 0.87141 0.83126 0.79077 0.80893 1.21741 1.22953 1.19242 1.20375 0.86997 0.95199 0.93714 1.21356 1.00735 0.90432 0.91390 1.22133 0.93865 0.99523 0.99980 1.22762 0.93570 0.94094 0.95641 1.67733 1.38960 1.06322 1.06578 1.22536 0.88119 0.98081 0.96902 1.21889 0.92575 0.98028 0.99046 1.98298 1.69314 1.68942 1.67060 0.95339 0.95212 0.90321 0.95166 0.94662 0.92314 0.90872 0.92782 0.92139 0.91723 0.83949 0.82616 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.50 10.09 -35.23 -0.36 -7.85 16 3 C 0.04 0.81 6.28 37.16 0.23 1.04 16 4 C 0.13 2.63 6.07 -4.04 -0.02 2.61 16 5 N -0.58 -13.25 2.10 -174.61 -0.37 -13.62 16 6 C -0.24 -6.52 9.30 -15.06 -0.14 -6.66 16 7 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 8 C 0.04 1.11 5.31 -17.43 -0.09 1.02 16 9 N -0.90 -26.30 13.97 55.49 0.78 -25.53 16 10 Si 0.87 21.53 25.08 -169.99 -4.26 17.26 16 11 H -0.29 -6.82 6.65 56.52 0.38 -6.45 16 12 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.16 3.40 4.41 -5.19 -0.02 3.38 16 15 C -0.03 -0.52 5.48 -104.28 -0.57 -1.09 16 16 C -0.13 -2.52 9.79 -39.45 -0.39 -2.90 16 17 C 0.10 1.58 11.18 -17.55 -0.20 1.38 16 18 N -0.49 -8.18 10.36 -13.22 -0.14 -8.32 16 19 C 0.10 1.60 10.99 -17.50 -0.19 1.41 16 20 C -0.09 -1.45 6.34 -39.35 -0.25 -1.70 16 21 Cl -0.06 -0.96 24.37 -51.86 -1.26 -2.22 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.07 1.27 4.28 -51.93 -0.22 1.05 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.06 1.14 7.24 -51.93 -0.38 0.77 16 31 H 0.07 1.47 2.85 -51.93 -0.15 1.32 16 32 H 0.14 2.80 8.06 -52.49 -0.42 2.37 16 33 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 296.67 15.07 4.47 4.47 Total: -1.00 -30.20 296.67 -5.80 -36.00 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.13 Total: -0.29 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.53 Total: 0.10 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.27 Total: -47.46 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.36 Total: -7.85 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.26 Total: 17.26 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.26 Total: -2.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.20 -5.80 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316486060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.945 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds