Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99769 * 2 1 4 4 C 1.53000 * 109.46832 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47205 * 65.84877 * 4 3 2 6 6 C 1.36936 * 119.99693 * 272.61240 * 5 4 3 7 7 H 1.08003 * 120.00410 * 324.45183 * 6 5 4 8 8 C 1.38815 * 119.99522 * 144.44692 * 6 5 4 9 9 N 1.31619 * 119.99723 * 155.99308 * 8 6 5 10 10 Si 1.86802 * 120.00062 * 335.99367 * 8 6 5 11 11 H 1.48501 * 109.46918 * 95.24986 * 10 8 6 12 12 H 1.48498 * 109.46752 * 215.24878 * 10 8 6 13 13 H 1.48490 * 109.47014 * 335.24895 * 10 8 6 14 14 C 1.46500 * 119.99951 * 92.61581 * 5 4 3 15 15 C 1.50699 * 109.46880 * 94.55605 * 14 5 4 16 16 C 1.38649 * 120.79699 * 97.34200 * 15 14 5 17 17 C 1.38192 * 119.17831 * 180.02562 * 16 15 14 18 18 N 1.31874 * 120.79562 * 0.02562 * 17 16 15 19 19 C 1.31846 * 121.74125 * 359.97438 * 18 17 16 20 20 C 1.38355 * 120.74341 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 120.43474 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.46617 * 300.00422 * 1 2 3 23 23 H 1.09004 * 109.47037 * 59.99478 * 1 2 3 24 24 H 1.08998 * 109.47306 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47140 * 60.00207 * 3 2 1 26 26 H 1.08995 * 109.47516 * 300.00179 * 3 2 1 27 27 H 1.09004 * 109.46934 * 305.84744 * 4 3 2 28 28 H 1.09001 * 109.47301 * 185.85122 * 4 3 2 29 29 H 0.97002 * 120.00179 * 180.02562 * 9 8 6 30 30 H 1.08993 * 109.47007 * 334.55627 * 14 5 4 31 31 H 1.08995 * 109.47231 * 214.55212 * 14 5 4 32 32 H 1.07999 * 120.40947 * 0.04177 * 16 15 14 33 33 H 1.07998 * 119.59832 * 179.72135 * 17 16 15 34 34 H 1.07996 * 119.63057 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9772 0.5830 -1.2613 6 6 4.0470 -0.7793 -1.3822 7 1 4.3467 -1.3818 -0.5375 8 6 3.7325 -1.3857 -2.5906 9 7 4.2239 -2.5721 -2.8791 10 14 2.6117 -0.5179 -3.8074 11 1 3.4348 0.2162 -4.8018 12 1 1.7689 -1.5211 -4.5063 13 1 1.7407 0.4408 -3.0812 14 6 4.3442 1.4386 -2.3923 15 6 5.8335 1.6686 -2.3857 16 6 6.6731 0.9056 -3.1827 17 6 8.0338 1.1446 -3.1500 18 7 8.5358 2.0843 -2.3728 19 6 7.7689 2.8294 -1.6015 20 6 6.3974 2.6481 -1.5810 21 17 5.3953 3.6333 -0.5618 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8505 0.5558 0.8322 28 1 3.9785 2.1751 0.1041 29 1 4.0045 -2.9958 -3.7236 30 1 3.8285 2.3950 -2.3067 31 1 4.0558 0.9525 -3.3243 32 1 6.2687 0.1343 -3.8214 33 1 8.6946 0.5513 -3.7647 34 1 8.2163 3.5893 -0.9780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316486060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -1.816154 kcal Electronic energy + Delta-G solvation = -19190.959895 eV Core-core repulsion = 16150.483047 eV Total energy + Delta-G solvation = -3040.476848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20513 -38.99935 -37.74750 -37.36663 -34.10868 -33.55596 -31.94873 -30.56927 -28.02666 -27.23382 -25.23275 -24.41258 -23.51879 -21.90208 -19.09758 -17.97899 -17.55002 -17.33126 -17.06299 -16.89113 -16.66553 -15.91426 -15.69910 -15.04010 -14.89165 -14.68994 -14.53408 -14.20868 -13.55954 -13.48939 -13.00397 -12.87363 -12.69282 -12.65084 -12.47571 -12.12261 -11.93796 -11.61280 -11.44519 -10.64577 -10.57077 -10.46050 -10.38657 -9.85876 -8.85877 -8.13554 -5.47147 -0.00013 0.19396 1.04065 1.25422 1.40968 1.50619 2.43808 2.67625 3.05816 3.24275 3.39376 3.51127 3.67361 3.79208 4.02325 4.30998 4.33759 4.42010 4.42805 4.53278 4.58827 4.60660 4.71838 4.74226 4.77361 4.85592 4.91462 5.18645 5.30174 5.59246 5.94892 6.21449 6.50690 6.85957 6.98603 7.64166 8.02764 9.06659 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.009187 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.654766 B = 3047.004531 C = 4147.195186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.043 3.957 4 C 0.131 3.869 5 N -0.593 5.593 6 C -0.223 4.223 7 H 0.037 0.963 8 C -0.006 4.006 9 N -0.944 5.944 10 Si 0.923 3.077 11 H -0.273 1.273 12 H -0.315 1.315 13 H -0.261 1.261 14 C 0.164 3.836 15 C -0.045 4.045 16 C -0.154 4.154 17 C 0.101 3.899 18 N -0.490 5.490 19 C 0.109 3.891 20 C -0.088 4.088 21 Cl -0.043 7.043 22 H 0.058 0.942 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.099 0.901 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.184 0.816 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 13.792 2.558 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.035 4.035 4 C 0.006 3.994 5 N -0.314 5.314 6 C -0.353 4.353 7 H 0.055 0.945 8 C -0.202 4.202 9 N -0.588 5.588 10 Si 0.753 3.247 11 H -0.200 1.200 12 H -0.244 1.244 13 H -0.186 1.186 14 C 0.039 3.961 15 C -0.057 4.057 16 C -0.175 4.175 17 C -0.054 4.054 18 N -0.200 5.200 19 C -0.048 4.048 20 C -0.118 4.118 21 Cl -0.014 7.014 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.201 0.799 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.067 13.718 2.581 14.000 hybrid contribution -1.984 -0.337 -0.719 2.138 sum -0.918 13.381 1.862 13.541 Atomic orbital electron populations 1.22824 0.81474 1.02746 1.00040 1.88123 1.19759 1.28682 1.95209 1.23319 0.96480 0.84424 0.99285 1.21605 0.91001 0.98949 0.87802 1.44050 1.74463 1.01859 1.10982 1.18373 1.37765 0.81722 0.97441 0.94526 1.25717 0.99081 0.95800 0.99578 1.69996 1.45390 1.18945 1.24508 0.86212 0.81235 0.77849 0.79362 1.20032 1.24429 1.18569 1.20305 0.88517 0.95331 0.91953 1.21247 0.99723 0.91932 0.92779 1.22134 0.95089 0.99663 1.00616 1.23115 0.92978 0.93922 0.95423 1.67848 1.39092 1.06367 1.06685 1.23089 0.87636 0.97916 0.96207 1.21938 0.93398 0.97728 0.98690 1.98299 1.68861 1.67975 1.66272 0.92310 0.94961 0.90006 0.91603 0.94754 0.93881 0.88388 0.93064 0.89950 0.93661 0.85718 0.79949 0.79423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.43 10.09 -148.98 -1.50 -17.94 16 3 C 0.04 1.53 6.28 71.98 0.45 1.98 16 4 C 0.13 5.00 6.07 86.38 0.52 5.52 16 5 N -0.59 -26.78 2.10 -706.35 -1.48 -28.26 16 6 C -0.22 -12.34 9.30 84.03 0.78 -11.56 16 7 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 8 C -0.01 -0.32 5.31 84.86 0.45 0.13 16 9 N -0.94 -57.64 13.97 21.65 0.30 -57.33 16 10 Si 0.92 45.27 25.08 68.60 1.72 47.00 16 11 H -0.27 -12.49 6.65 99.48 0.66 -11.83 16 12 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 13 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.16 6.66 4.41 85.63 0.38 7.04 16 15 C -0.05 -1.69 5.48 -19.64 -0.11 -1.80 16 16 C -0.15 -5.71 9.79 22.36 0.22 -5.50 16 17 C 0.10 3.19 11.18 84.68 0.95 4.14 16 18 N -0.49 -15.20 10.36 -195.75 -2.03 -17.23 16 19 C 0.11 3.11 10.99 84.72 0.93 4.04 16 20 C -0.09 -2.76 6.34 22.42 0.14 -2.62 16 21 Cl -0.04 -1.13 24.37 -2.72 -0.07 -1.20 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.76 8.06 -2.38 -0.02 1.74 16 28 H 0.10 3.16 4.28 -2.39 -0.01 3.15 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.08 2.92 7.24 -2.39 -0.02 2.90 16 31 H 0.05 2.02 2.85 -2.39 -0.01 2.02 16 32 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 33 H 0.18 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -66.45 296.67 3.97 -62.48 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.06 Total: 9.07 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.97 Total: 3.43 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -3.21 Total: -102.83 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.50 Total: -17.94 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.72 Total: 47.00 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -66.45 3.97 -62.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316486060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.661 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds