Wall clock time and date at job start Mon Mar 30 2020 01:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47349 * 2 1 4 4 S 1.81401 * 109.47289 * 120.00330 * 2 1 3 5 5 C 1.76204 * 102.99644 * 294.99819 * 4 2 1 6 6 N 1.33682 * 125.61833 * 359.95826 * 5 4 2 7 7 C 1.30868 * 109.76772 * 180.02562 * 6 5 4 8 8 N 1.34354 * 108.22739 * 0.02562 * 7 6 5 9 9 H 0.97004 * 126.75706 * 179.97438 * 8 7 6 10 10 N 1.31253 * 125.61211 * 180.02562 * 5 4 2 11 11 C 1.50699 * 109.46808 * 240.00202 * 2 1 3 12 12 O 1.21273 * 120.00195 * 264.99555 * 11 2 1 13 13 N 1.34779 * 119.99927 * 85.00157 * 11 2 1 14 14 C 1.46503 * 120.00067 * 359.97438 * 13 11 2 15 15 C 1.46497 * 119.99725 * 179.97438 * 13 11 2 16 16 C 1.50702 * 109.47495 * 90.00110 * 15 13 11 17 17 H 1.08004 * 119.99252 * 359.97438 * 16 15 13 18 18 C 1.37868 * 120.00205 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00598 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99808 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47525 * 90.00252 * 20 18 16 22 22 H 1.48510 * 109.47297 * 210.00008 * 20 18 16 23 23 H 1.48499 * 109.47337 * 329.99542 * 20 18 16 24 24 H 1.08995 * 109.47462 * 59.99614 * 1 2 3 25 25 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46746 * 299.99623 * 1 2 3 27 27 H 1.08000 * 125.88757 * 180.26010 * 7 6 5 28 28 H 1.09005 * 109.46744 * 90.00054 * 14 13 11 29 29 H 1.08999 * 109.46989 * 210.00111 * 14 13 11 30 30 H 1.09000 * 109.46642 * 330.00165 * 14 13 11 31 31 H 1.09003 * 109.47032 * 209.99646 * 15 13 11 32 32 H 1.09000 * 109.47374 * 329.99639 * 15 13 11 33 33 H 0.96995 * 120.00771 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.5828 0.1846 2.7922 6 7 0.8892 1.3182 2.6475 7 6 0.6433 1.8396 3.8223 8 7 1.1821 1.0402 4.7581 9 1 1.1588 1.1732 5.7187 10 7 1.7860 -0.0258 4.0717 11 6 2.0323 -0.7104 -1.2305 12 8 2.3207 -1.8870 -1.1761 13 7 2.1610 -0.0379 -2.3915 14 6 1.8121 1.3834 -2.4573 15 6 2.6498 -0.7284 -3.5875 16 6 1.4831 -1.3088 -4.3446 17 1 0.4781 -1.1768 -3.9718 18 6 1.6988 -2.0081 -5.5130 19 7 2.9225 -2.1684 -5.9673 20 14 0.2527 -2.7281 -6.4511 21 1 -0.2468 -1.7313 -7.4320 22 1 0.6885 -3.9531 -7.1686 23 1 -0.8333 -3.0724 -5.4985 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.0976 2.7530 4.0079 28 1 2.6907 1.9844 -2.2227 29 1 1.4635 1.6258 -3.4612 30 1 1.0225 1.5974 -1.7369 31 1 3.1802 -0.0205 -4.2244 32 1 3.3269 -1.5302 -3.2930 33 1 3.0743 -2.6607 -6.7891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330617667.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:55 Heat of formation + Delta-G solvation = 33.358805 kcal Electronic energy + Delta-G solvation = -18155.571009 eV Core-core repulsion = 15150.955919 eV Total energy + Delta-G solvation = -3004.615090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.97623 -40.80973 -36.67797 -35.02438 -34.10379 -33.34843 -32.21598 -29.73053 -27.48571 -25.97858 -24.65165 -24.04328 -23.07847 -20.27513 -19.53675 -18.66637 -18.18790 -17.94980 -16.87959 -16.55488 -16.28516 -16.09157 -15.81796 -15.29863 -14.63821 -14.55676 -13.96657 -13.56065 -13.43047 -13.35688 -13.06540 -13.04689 -12.96811 -12.73168 -12.49947 -12.19334 -11.70739 -11.68743 -11.40874 -11.14787 -11.06319 -10.70170 -10.62062 -9.48633 -8.82598 -8.20818 -6.35341 -0.06237 0.55120 1.02624 1.38682 1.42081 1.52011 1.68398 1.73757 2.03380 2.28074 2.43448 3.09314 3.46463 3.63618 3.83175 4.00798 4.04770 4.37346 4.66560 4.69324 4.73996 4.87479 4.97067 4.99658 5.09538 5.20597 5.23310 5.54799 5.80678 6.06149 6.23382 6.60865 6.73946 6.88031 7.21982 7.38403 8.86632 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041313 B = 0.004105 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.584563 B = 6818.604021 C = 6880.260371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 H 0.138 0.862 4 S 0.029 5.971 5 C 0.194 3.806 6 N -0.568 5.568 7 C 0.291 3.709 8 N -0.469 5.469 9 H 0.461 0.539 10 N -0.329 5.329 11 C 0.518 3.482 12 O -0.580 6.580 13 N -0.597 5.597 14 C 0.071 3.929 15 C 0.259 3.741 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.273 1.273 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.283 0.717 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.000 1.000 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 14.547 19.741 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.217 4.217 3 H 0.156 0.844 4 S 0.256 5.744 5 C -0.197 4.197 6 N -0.299 5.299 7 C -0.009 4.009 8 N -0.189 5.189 9 H 0.310 0.690 10 N -0.163 5.163 11 C 0.304 3.696 12 O -0.460 6.460 13 N -0.328 5.328 14 C -0.071 4.071 15 C 0.138 3.862 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.298 0.702 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.018 0.982 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.190 12.446 19.601 24.029 hybrid contribution -0.999 0.660 -0.152 1.207 sum -7.189 13.106 19.449 24.530 Atomic orbital electron populations 1.21964 0.88822 1.03109 1.05098 1.23423 1.02738 1.03777 0.91752 0.84407 1.86494 1.68583 1.27088 0.92208 1.26035 1.00323 0.97367 0.95997 1.70793 1.21842 1.09449 1.27830 1.27176 0.93543 0.97672 0.82500 1.48041 1.41898 1.17033 1.11965 0.68959 1.78209 1.22974 1.10701 1.04400 1.20144 0.78226 0.86618 0.84645 1.90681 1.52115 1.17767 1.85483 1.48045 1.63368 1.12044 1.09369 1.22089 1.01721 0.78954 1.04362 1.18847 0.94237 0.91802 0.81314 1.21695 0.93717 1.35087 1.07622 0.92569 1.25850 0.98789 0.96141 0.98323 1.70047 1.21745 1.42203 1.22820 0.85410 0.78819 0.78122 0.78425 1.18694 1.20797 1.19738 0.89856 0.93014 0.88250 0.70174 0.90877 0.90593 0.88829 0.95196 0.98204 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.83 71.98 0.64 -3.02 16 2 C -0.08 -2.70 2.04 29.85 0.06 -2.64 16 3 H 0.14 3.72 6.92 -2.39 -0.02 3.70 16 4 S 0.03 0.99 20.90 -56.49 -1.18 -0.19 16 5 C 0.19 5.37 8.02 180.47 1.45 6.82 16 6 N -0.57 -12.11 9.09 -200.77 -1.82 -13.94 16 7 C 0.29 3.16 13.12 180.37 2.37 5.52 16 8 N -0.47 -6.12 7.43 -60.51 -0.45 -6.57 16 9 H 0.46 1.98 8.96 -213.10 -1.91 0.07 16 10 N -0.33 -8.42 12.82 -58.58 -0.75 -9.17 16 11 C 0.52 22.47 6.80 87.66 0.60 23.07 16 12 O -0.58 -31.15 15.72 -3.01 -0.05 -31.20 16 13 N -0.60 -25.70 2.86 -851.12 -2.43 -28.13 16 14 C 0.07 2.10 9.87 127.77 1.26 3.36 16 15 C 0.26 14.07 5.16 85.63 0.44 14.52 16 16 C -0.54 -31.31 9.38 25.60 0.24 -31.07 16 17 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 18 C 0.01 0.46 5.46 84.65 0.46 0.92 16 19 N -0.93 -56.41 13.29 21.44 0.28 -56.12 16 20 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 H 0.08 2.11 6.84 -2.39 -0.02 2.09 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.10 2.41 6.21 -2.38 -0.01 2.39 16 27 H 0.28 -0.72 8.06 -2.91 -0.02 -0.74 16 28 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 30 H 0.09 2.19 5.17 -2.39 -0.01 2.17 16 31 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 32 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -83.30 299.75 2.37 -80.92 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -0.76 Total: -0.14 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 7.51 Total: 17.48 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -5.17 Total: -113.93 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.05 Total: -31.20 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.18 Total: -0.19 kcal Total: -83.30 2.37 -80.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330617667.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.281 kcal (2) G-P(sol) polarization free energy of solvation -83.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds