Wall clock time and date at job start Mon Mar 30 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46859 * 2 1 4 4 S 1.81406 * 109.47134 * 239.99996 * 2 1 3 5 5 C 1.76200 * 102.99840 * 65.00050 * 4 2 1 6 6 N 1.33691 * 125.61837 * 180.02562 * 5 4 2 7 7 C 1.30874 * 109.76855 * 179.97438 * 6 5 4 8 8 N 1.34349 * 108.22915 * 359.97438 * 7 6 5 9 9 H 0.96998 * 126.75717 * 179.97438 * 8 7 6 10 10 N 1.31256 * 125.61888 * 359.94562 * 5 4 2 11 11 C 1.50701 * 109.47465 * 120.00271 * 2 1 3 12 12 O 1.21276 * 120.00052 * 99.99216 * 11 2 1 13 13 N 1.34778 * 119.99797 * 280.00146 * 11 2 1 14 14 C 1.46505 * 120.00000 * 359.97438 * 13 11 2 15 15 C 1.46496 * 120.00310 * 179.97438 * 13 11 2 16 16 C 1.50700 * 109.46954 * 89.99927 * 15 13 11 17 17 H 1.08007 * 119.99726 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00640 * 180.02562 * 16 15 13 19 19 N 1.31520 * 119.99255 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00444 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47516 * 59.99805 * 20 18 16 22 22 H 1.48502 * 109.47351 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47194 * 299.99855 * 20 18 16 24 24 H 1.08996 * 109.47136 * 299.99666 * 1 2 3 25 25 H 1.08996 * 109.47042 * 59.99959 * 1 2 3 26 26 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 27 27 H 1.08000 * 125.88272 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.47339 * 89.99590 * 14 13 11 29 29 H 1.08993 * 109.46945 * 209.99946 * 14 13 11 30 30 H 1.08993 * 109.47010 * 330.00079 * 14 13 11 31 31 H 1.08995 * 109.47904 * 209.99860 * 15 13 11 32 32 H 1.09002 * 109.46831 * 330.00763 * 15 13 11 33 33 H 0.97004 * 119.99412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4812 5 6 1.5827 0.1846 -2.7922 6 7 1.7888 -0.0300 -4.0956 7 6 1.2460 0.9344 -4.7943 8 7 0.6719 1.7994 -3.9415 9 1 0.1942 2.6114 -4.1723 10 7 0.9002 1.2968 -2.6502 11 6 2.0324 -0.7105 1.2304 12 8 2.4064 -1.8617 1.1557 13 7 2.0660 -0.0665 2.4139 14 6 1.6145 1.3244 2.5041 15 6 2.5538 -0.7572 3.6102 16 6 4.0405 -0.5476 3.7400 17 1 4.5690 0.0417 3.0051 18 6 4.7261 -1.1079 4.7968 19 7 4.0825 -1.8249 5.6920 20 14 6.5688 -0.8474 4.9581 21 1 6.8552 0.6050 5.0745 22 1 7.0635 -1.5477 6.1707 23 1 7.2526 -1.3922 3.7578 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.2575 1.0200 -5.8708 28 1 0.5482 1.3465 2.7291 29 1 2.1636 1.8339 3.2958 30 1 1.7958 1.8275 1.5543 31 1 2.0522 -0.3567 4.4911 32 1 2.3433 -1.8233 3.5253 33 1 4.5648 -2.2188 6.4357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330617669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:58 Heat of formation + Delta-G solvation = 59.902468 kcal Electronic energy + Delta-G solvation = -18151.050760 eV Core-core repulsion = 15147.586690 eV Total energy + Delta-G solvation = -3003.464070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.13707 -39.15985 -34.92134 -33.35830 -32.71459 -32.30210 -31.24318 -27.80727 -25.99772 -24.47805 -23.46440 -22.68739 -22.12283 -19.03827 -18.42198 -16.77273 -16.59959 -16.41930 -15.71409 -15.63603 -15.01535 -14.66066 -14.22419 -13.82434 -13.23738 -13.07755 -12.46782 -12.24015 -12.11125 -11.90486 -11.77797 -11.72392 -11.20791 -10.91412 -10.82215 -10.59201 -10.48613 -10.16704 -10.15075 -9.94396 -9.65429 -9.04351 -8.42886 -7.74044 -7.60132 -6.04361 -4.09328 1.13140 1.32068 2.06219 2.60913 2.75959 3.27595 3.33978 3.38196 3.42598 3.84177 4.25222 4.45435 4.70219 4.88518 4.97576 5.12539 5.30483 5.56990 5.59366 5.71781 5.80743 5.89994 5.96635 6.09938 6.23297 6.76163 6.97145 7.39666 7.46756 7.70048 7.91221 8.21220 8.28254 8.82547 8.98708 9.55750 11.03821 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.004352 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.194755 B = 6432.972348 C = 6717.131411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 H 0.115 0.885 4 S 0.098 5.902 5 C 0.202 3.798 6 N -0.520 5.520 7 C 0.268 3.732 8 N -0.485 5.485 9 H 0.441 0.559 10 N -0.322 5.322 11 C 0.527 3.473 12 O -0.524 6.524 13 N -0.591 5.591 14 C 0.079 3.921 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.225 0.775 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 10.140 -17.540 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.254 4.254 3 H 0.133 0.867 4 S 0.325 5.675 5 C -0.188 4.188 6 N -0.250 5.250 7 C -0.033 4.033 8 N -0.204 5.204 9 H 0.286 0.714 10 N -0.156 5.156 11 C 0.311 3.689 12 O -0.401 6.401 13 N -0.323 5.323 14 C -0.065 4.065 15 C 0.127 3.873 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.241 0.759 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.729 8.399 -16.863 20.763 hybrid contribution -0.023 2.178 -0.291 2.197 sum -8.752 10.577 -17.153 21.970 Atomic orbital electron populations 1.21967 0.90606 1.03781 1.03506 1.23790 1.01647 1.04347 0.95605 0.86702 1.86566 1.67057 1.24514 0.89384 1.26691 0.98531 0.96104 0.97439 1.70636 1.26221 1.26758 1.01381 1.26176 0.91813 0.86258 0.99041 1.48007 1.44721 1.23074 1.04575 0.71408 1.78375 1.24528 1.13353 0.99367 1.19255 0.79462 0.86807 0.83417 1.90722 1.47852 1.16986 1.84505 1.48054 1.62041 1.12620 1.09613 1.21754 0.98985 0.83438 1.02297 1.19362 0.94303 0.93786 0.79803 1.21389 0.92965 1.32885 1.09569 0.92393 1.24925 0.98708 0.94822 0.95533 1.69926 1.36232 1.33763 1.13428 0.86543 0.85033 0.78215 0.77571 1.20264 1.21153 1.20036 0.90988 0.90760 0.91027 0.75881 0.93361 0.90404 0.92370 0.94679 0.93574 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.97 37.16 0.33 -1.58 16 2 C -0.12 -1.98 2.15 -27.88 -0.06 -2.04 16 3 H 0.12 1.73 6.31 -51.92 -0.33 1.40 16 4 S 0.10 1.66 20.84 -107.50 -2.24 -0.58 16 5 C 0.20 3.00 8.04 -90.96 -0.73 2.27 16 6 N -0.52 -7.02 11.21 -14.81 -0.17 -7.19 16 7 C 0.27 2.20 13.12 -90.69 -1.19 1.01 16 8 N -0.49 -4.00 7.43 29.52 0.22 -3.78 16 9 H 0.44 1.77 8.96 -182.34 -1.63 0.13 16 10 N -0.32 -4.16 10.69 30.13 0.32 -3.84 16 11 C 0.53 11.16 6.85 -10.98 -0.08 11.08 16 12 O -0.52 -13.31 15.62 5.56 0.09 -13.22 16 13 N -0.59 -12.54 2.86 -182.96 -0.52 -13.07 16 14 C 0.08 1.25 9.56 59.85 0.57 1.82 16 15 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 16 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 17 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 20 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.07 0.89 6.94 -51.93 -0.36 0.53 16 25 H 0.07 0.95 6.22 -51.93 -0.32 0.63 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.23 0.54 8.06 -52.49 -0.42 0.12 16 28 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 29 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.06 0.78 5.94 -51.93 -0.31 0.47 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -36.39 299.42 -8.64 -45.02 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.97 Total: -4.26 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.60 Total: 5.29 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.59 Total: -53.74 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.24 Total: -0.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.39 -8.64 -45.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330617669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.925 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds