Wall clock time and date at job start Mon Mar 30 2020 01:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46859 * 2 1 4 4 S 1.81406 * 109.47134 * 239.99996 * 2 1 3 5 5 C 1.76200 * 102.99840 * 65.00050 * 4 2 1 6 6 N 1.33691 * 125.61837 * 180.02562 * 5 4 2 7 7 C 1.30874 * 109.76855 * 179.97438 * 6 5 4 8 8 N 1.34349 * 108.22915 * 359.97438 * 7 6 5 9 9 H 0.96998 * 126.75717 * 179.97438 * 8 7 6 10 10 N 1.31256 * 125.61888 * 359.94562 * 5 4 2 11 11 C 1.50701 * 109.47465 * 120.00271 * 2 1 3 12 12 O 1.21276 * 120.00052 * 99.99216 * 11 2 1 13 13 N 1.34778 * 119.99797 * 280.00146 * 11 2 1 14 14 C 1.46505 * 120.00000 * 359.97438 * 13 11 2 15 15 C 1.46496 * 120.00310 * 179.97438 * 13 11 2 16 16 C 1.50700 * 109.46954 * 89.99927 * 15 13 11 17 17 H 1.08007 * 119.99726 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00640 * 180.02562 * 16 15 13 19 19 N 1.31520 * 119.99255 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00444 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47516 * 59.99805 * 20 18 16 22 22 H 1.48502 * 109.47351 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47194 * 299.99855 * 20 18 16 24 24 H 1.08996 * 109.47136 * 299.99666 * 1 2 3 25 25 H 1.08996 * 109.47042 * 59.99959 * 1 2 3 26 26 H 1.09002 * 109.46859 * 179.97438 * 1 2 3 27 27 H 1.08000 * 125.88272 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.47339 * 89.99590 * 14 13 11 29 29 H 1.08993 * 109.46945 * 209.99946 * 14 13 11 30 30 H 1.08993 * 109.47010 * 330.00079 * 14 13 11 31 31 H 1.08995 * 109.47904 * 209.99860 * 15 13 11 32 32 H 1.09002 * 109.46831 * 330.00763 * 15 13 11 33 33 H 0.97004 * 119.99412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4812 5 6 1.5827 0.1846 -2.7922 6 7 1.7888 -0.0300 -4.0956 7 6 1.2460 0.9344 -4.7943 8 7 0.6719 1.7994 -3.9415 9 1 0.1942 2.6114 -4.1723 10 7 0.9002 1.2968 -2.6502 11 6 2.0324 -0.7105 1.2304 12 8 2.4064 -1.8617 1.1557 13 7 2.0660 -0.0665 2.4139 14 6 1.6145 1.3244 2.5041 15 6 2.5538 -0.7572 3.6102 16 6 4.0405 -0.5476 3.7400 17 1 4.5690 0.0417 3.0051 18 6 4.7261 -1.1079 4.7968 19 7 4.0825 -1.8249 5.6920 20 14 6.5688 -0.8474 4.9581 21 1 6.8552 0.6050 5.0745 22 1 7.0635 -1.5477 6.1707 23 1 7.2526 -1.3922 3.7578 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.2575 1.0200 -5.8708 28 1 0.5482 1.3465 2.7291 29 1 2.1636 1.8339 3.2958 30 1 1.7958 1.8275 1.5543 31 1 2.0522 -0.3567 4.4911 32 1 2.3433 -1.8233 3.5253 33 1 4.5648 -2.2188 6.4357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330617669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:57 Heat of formation + Delta-G solvation = 34.264605 kcal Electronic energy + Delta-G solvation = -18152.162501 eV Core-core repulsion = 15147.586690 eV Total energy + Delta-G solvation = -3004.575811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.98231 -40.84442 -36.70880 -35.06718 -34.03876 -33.54155 -32.17727 -29.73045 -27.50554 -26.08605 -24.32566 -24.29290 -23.20053 -20.34942 -19.50372 -18.72089 -18.17823 -17.82724 -17.02094 -16.58227 -16.50825 -16.20822 -15.76230 -15.14799 -14.62859 -14.59522 -14.07646 -13.59185 -13.49975 -13.37973 -13.11949 -13.02379 -12.96838 -12.78889 -12.54176 -12.19745 -11.75121 -11.70331 -11.53117 -11.06243 -11.01422 -10.74166 -10.63483 -9.51371 -8.83552 -8.22667 -6.37111 -0.06059 0.50311 0.94659 1.37657 1.42251 1.49199 1.65968 1.74741 2.06432 2.21805 2.41990 3.07569 3.43301 3.61874 3.72710 3.85983 4.01846 4.38226 4.56787 4.64165 4.71427 4.85652 4.92248 4.97317 5.06026 5.10801 5.21419 5.51922 5.78400 6.04447 6.23166 6.57606 6.71551 6.89970 7.19257 7.36205 8.84550 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.004352 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.194755 B = 6432.972348 C = 6717.131411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 H 0.132 0.868 4 S 0.038 5.962 5 C 0.193 3.807 6 N -0.565 5.565 7 C 0.290 3.710 8 N -0.467 5.467 9 H 0.461 0.539 10 N -0.334 5.334 11 C 0.519 3.481 12 O -0.577 6.577 13 N -0.597 5.597 14 C 0.073 3.927 15 C 0.260 3.740 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.279 1.279 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.282 0.718 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.002 0.998 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 12.856 -19.454 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.229 4.229 3 H 0.150 0.850 4 S 0.265 5.735 5 C -0.198 4.198 6 N -0.296 5.296 7 C -0.009 4.009 8 N -0.188 5.188 9 H 0.311 0.689 10 N -0.170 5.170 11 C 0.305 3.695 12 O -0.458 6.458 13 N -0.327 5.327 14 C -0.069 4.069 15 C 0.139 3.861 16 C -0.585 4.585 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.184 1.184 22 H -0.202 1.202 23 H -0.204 1.204 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.297 0.703 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.248 11.201 -18.794 23.753 hybrid contribution 0.036 1.410 0.165 1.420 sum -9.212 12.611 -18.629 24.309 Atomic orbital electron populations 1.21944 0.88366 1.03626 1.05014 1.23544 1.03064 1.03710 0.92552 0.85032 1.86689 1.68609 1.26747 0.91458 1.26085 0.99971 0.96505 0.97232 1.70563 1.28445 1.29443 1.01176 1.27183 0.88916 0.84048 1.00770 1.47946 1.44104 1.23650 1.03075 0.68880 1.78233 1.24030 1.12670 1.02027 1.20032 0.78447 0.86405 0.84591 1.90688 1.50070 1.19533 1.85511 1.48034 1.61756 1.14587 1.08363 1.22070 1.00653 0.80276 1.03893 1.18843 0.93622 0.91863 0.81747 1.21672 0.94230 1.33022 1.09597 0.92871 1.25820 1.03574 0.94354 0.95129 1.70039 1.38156 1.34462 1.13968 0.85496 0.79024 0.79046 0.77441 1.18430 1.20213 1.20450 0.89141 0.89330 0.92111 0.70255 0.90267 0.90788 0.89476 0.95040 0.97982 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.97 71.98 0.65 -2.74 16 2 C -0.10 -3.09 2.15 29.85 0.06 -3.03 16 3 H 0.13 3.73 6.31 -2.39 -0.02 3.71 16 4 S 0.04 1.31 20.84 -56.49 -1.18 0.14 16 5 C 0.19 5.51 8.04 180.47 1.45 6.96 16 6 N -0.57 -14.22 11.21 -200.76 -2.25 -16.47 16 7 C 0.29 3.64 13.12 180.37 2.37 6.00 16 8 N -0.47 -5.93 7.43 -60.51 -0.45 -6.38 16 9 H 0.46 1.68 8.96 -213.11 -1.91 -0.23 16 10 N -0.33 -7.80 10.69 -58.58 -0.63 -8.43 16 11 C 0.52 22.48 6.85 87.66 0.60 23.08 16 12 O -0.58 -30.92 15.62 -3.02 -0.05 -30.97 16 13 N -0.60 -25.55 2.86 -851.16 -2.43 -27.98 16 14 C 0.07 2.17 9.56 127.77 1.22 3.39 16 15 C 0.26 14.08 5.16 85.63 0.44 14.52 16 16 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 18 C 0.01 0.61 5.46 84.65 0.46 1.07 16 19 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 20 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H 0.09 1.99 6.94 -2.39 -0.02 1.98 16 25 H 0.09 2.07 6.22 -2.39 -0.01 2.06 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.28 -0.23 8.06 -2.91 -0.02 -0.26 16 28 H 0.08 1.89 7.66 -2.39 -0.02 1.87 16 29 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.09 2.08 5.94 -2.39 -0.01 2.07 16 31 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -83.58 299.42 2.06 -81.52 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -0.76 Total: -0.56 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.49 Total: 17.71 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -5.47 Total: -115.23 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.18 Total: 0.14 kcal Total: -83.58 2.06 -81.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330617669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.782 kcal (2) G-P(sol) polarization free energy of solvation -83.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds