Wall clock time and date at job start Mon Mar 30 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48495 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47386 * 300.00792 * 3 2 1 6 6 H 1.48499 * 109.46958 * 60.00445 * 3 2 1 7 7 C 1.37877 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99610 * 0.02562 * 7 2 1 10 10 S 1.81006 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.76195 * 99.99904 * 179.97438 * 10 9 7 12 12 N 1.31541 * 126.45423 * 0.18188 * 11 10 9 13 13 N 1.28426 * 110.49910 * 180.28763 * 12 11 10 14 14 N 1.28903 * 110.34238 * 359.72031 * 13 12 11 15 15 N 1.35401 * 126.45087 * 179.97438 * 11 10 9 16 16 C 1.46500 * 127.38363 * 359.97438 * 15 11 10 17 17 C 1.53175 * 109.54071 * 119.71235 * 16 15 11 18 18 C 1.53092 * 109.16344 * 176.84833 * 17 16 15 19 19 O 1.42905 * 109.41215 * 302.38824 * 18 17 16 20 20 C 1.42905 * 114.09831 * 61.16158 * 19 18 17 21 21 C 1.53098 * 109.41155 * 298.83847 * 20 19 18 22 22 H 0.96996 * 120.00083 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47584 * 59.99969 * 9 7 2 24 24 H 1.09000 * 109.46857 * 299.99552 * 9 7 2 25 25 H 1.08996 * 109.54248 * 359.53571 * 16 15 11 26 26 H 1.09004 * 109.52714 * 56.93853 * 17 16 15 27 27 H 1.09001 * 109.57654 * 296.78583 * 17 16 15 28 28 H 1.08997 * 109.48111 * 182.40965 * 18 17 16 29 29 H 1.09000 * 109.48212 * 62.37239 * 18 17 16 30 30 H 1.09000 * 109.47932 * 58.81878 * 20 19 18 31 31 H 1.08993 * 109.48024 * 178.86013 * 20 19 18 32 32 H 1.08996 * 109.52270 * 297.70307 * 21 20 19 33 33 H 1.08995 * 109.57012 * 177.54155 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4274 -3.8748 -0.0014 11 6 1.3074 -5.2350 -0.0021 12 7 -0.0062 -5.1658 -0.0060 13 7 -0.5186 -6.3434 0.0007 14 7 0.4109 -7.2365 0.0034 15 7 1.6368 -6.5484 -0.0027 16 6 2.9823 -7.1279 -0.0033 17 6 3.1702 -7.9881 1.2501 18 6 4.5488 -8.6521 1.2019 19 8 4.6598 -9.4302 0.0083 20 6 4.5396 -8.6710 -1.1964 21 6 3.1606 -8.0078 -1.2445 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6242 -2.5574 0.8881 25 1 3.7235 -6.3288 -0.0116 26 1 2.3971 -8.7558 1.2844 27 1 3.0993 -7.3600 2.1381 28 1 4.6712 -9.2993 2.0703 29 1 5.3225 -7.8843 1.2085 30 1 5.3132 -7.9035 -1.2210 31 1 4.6553 -9.3317 -2.0554 32 1 2.3874 -8.7758 -1.2606 33 1 3.0822 -7.3930 -2.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330658928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:38 Heat of formation + Delta-G solvation = 55.095971 kcal Electronic energy + Delta-G solvation = -18223.627360 eV Core-core repulsion = 15219.954865 eV Total energy + Delta-G solvation = -3003.672496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.48815 -39.66284 -35.68445 -33.33157 -31.94012 -31.67349 -31.55125 -28.76934 -26.00213 -23.99944 -23.71185 -22.97089 -22.60947 -20.38985 -18.12023 -16.95629 -16.52533 -16.32038 -16.02176 -15.90731 -15.16527 -14.88862 -14.31375 -14.25223 -13.64068 -12.92336 -12.83312 -12.60003 -12.48147 -12.39024 -11.79190 -11.66324 -11.64061 -11.06542 -11.04681 -10.82029 -10.68967 -10.52200 -10.50498 -10.07585 -10.02643 -9.81031 -9.48331 -8.75510 -7.33903 -6.31736 -4.41777 1.23391 1.35392 2.31578 2.65567 3.08952 3.17174 3.25026 3.30104 3.50094 4.03860 4.22802 4.24210 4.52049 4.55455 4.82770 4.86396 4.90499 5.04970 5.13912 5.19716 5.30966 5.36889 5.49703 5.63367 5.70034 5.74030 5.91773 6.33339 6.79103 6.92421 7.04277 7.53696 7.77378 8.58993 8.82275 9.23188 10.78373 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.004553 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.965927 B = 6147.802932 C = 6807.167850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.074 3.926 10 S -0.024 6.024 11 C 0.231 3.769 12 N -0.330 5.330 13 N -0.040 5.040 14 N -0.102 5.102 15 N -0.373 5.373 16 C 0.157 3.843 17 C -0.165 4.165 18 C 0.066 3.934 19 O -0.380 6.380 20 C 0.066 3.934 21 C -0.164 4.164 22 H 0.269 0.731 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.733 -14.302 -0.005 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.133 4.133 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.087 0.913 9 C -0.074 4.074 10 S 0.202 5.798 11 C -0.152 4.152 12 N -0.187 5.187 13 N -0.036 5.036 14 N -0.089 5.089 15 N -0.173 5.173 16 C 0.054 3.946 17 C -0.204 4.204 18 C -0.011 4.011 19 O -0.298 6.298 20 C -0.011 4.011 21 C -0.203 4.203 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.133 0.867 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.447 -14.964 -0.006 18.250 hybrid contribution -0.244 1.394 -0.002 1.415 sum 10.203 -13.570 -0.008 16.978 Atomic orbital electron populations 1.69979 1.06137 1.27669 1.47673 1.24940 0.94982 0.99240 0.94147 0.86262 0.79895 0.82303 0.77979 1.19378 1.20535 1.20530 1.20575 0.93317 0.88339 1.54913 0.91268 1.21518 0.93721 0.89053 1.03073 1.85697 1.10652 0.94208 1.89199 1.28395 0.97323 0.90973 0.98553 1.75102 1.03679 1.15565 1.24312 1.77837 1.22098 0.94297 1.09335 1.82273 0.85112 1.17957 1.23573 1.51677 1.08196 1.03642 1.53826 1.21595 0.78466 0.97201 0.97377 1.22606 1.00277 1.00344 0.97138 1.22585 0.94476 0.95678 0.88369 1.87967 1.93077 1.35086 1.13678 1.22584 0.94450 0.95989 0.88082 1.22600 1.00291 1.00179 0.97252 0.92125 0.92409 0.92419 0.86729 0.89255 0.89672 0.87817 0.92289 0.92292 0.87816 0.89243 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 13.29 55.43 0.74 -23.96 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.81 9.13 -34.44 -0.31 -14.12 16 8 H 0.07 1.73 7.71 -52.49 -0.40 1.33 16 9 C 0.07 1.81 4.99 36.01 0.18 1.99 16 10 S -0.02 -0.46 21.36 -107.50 -2.30 -2.75 16 11 C 0.23 4.49 8.15 -89.17 -0.73 3.77 16 12 N -0.33 -7.31 11.57 30.50 0.35 -6.96 16 13 N -0.04 -0.84 13.38 60.35 0.81 -0.03 16 14 N -0.10 -1.88 13.85 60.35 0.84 -1.04 16 15 N -0.37 -6.17 3.34 -54.62 -0.18 -6.35 16 16 C 0.16 1.87 3.11 -67.75 -0.21 1.66 16 17 C -0.16 -1.69 5.72 -26.59 -0.15 -1.84 16 18 C 0.07 0.54 6.84 37.20 0.25 0.79 16 19 O -0.38 -3.67 10.77 -35.23 -0.38 -4.05 16 20 C 0.07 0.54 6.84 37.21 0.25 0.79 16 21 C -0.16 -1.68 5.71 -26.59 -0.15 -1.83 16 22 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.06 1.53 8.14 -51.92 -0.42 1.11 16 24 H 0.06 1.53 8.14 -51.92 -0.42 1.11 16 25 H 0.11 1.27 7.33 -51.93 -0.38 0.89 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -29.89 299.12 -5.75 -35.64 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.15 Total: -3.12 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.96 Total: -6.95 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 2.55 Total: -38.33 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.38 Total: -4.05 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -2.30 Total: -2.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.89 -5.75 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330658928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.739 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds