Wall clock time and date at job start Mon Mar 30 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48495 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47386 * 300.00792 * 3 2 1 6 6 H 1.48499 * 109.46958 * 60.00445 * 3 2 1 7 7 C 1.37877 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99610 * 0.02562 * 7 2 1 10 10 S 1.81006 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.76195 * 99.99904 * 179.97438 * 10 9 7 12 12 N 1.31541 * 126.45423 * 0.18188 * 11 10 9 13 13 N 1.28426 * 110.49910 * 180.28763 * 12 11 10 14 14 N 1.28903 * 110.34238 * 359.72031 * 13 12 11 15 15 N 1.35401 * 126.45087 * 179.97438 * 11 10 9 16 16 C 1.46500 * 127.38363 * 359.97438 * 15 11 10 17 17 C 1.53175 * 109.54071 * 119.71235 * 16 15 11 18 18 C 1.53092 * 109.16344 * 176.84833 * 17 16 15 19 19 O 1.42905 * 109.41215 * 302.38824 * 18 17 16 20 20 C 1.42905 * 114.09831 * 61.16158 * 19 18 17 21 21 C 1.53098 * 109.41155 * 298.83847 * 20 19 18 22 22 H 0.96996 * 120.00083 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47584 * 59.99969 * 9 7 2 24 24 H 1.09000 * 109.46857 * 299.99552 * 9 7 2 25 25 H 1.08996 * 109.54248 * 359.53571 * 16 15 11 26 26 H 1.09004 * 109.52714 * 56.93853 * 17 16 15 27 27 H 1.09001 * 109.57654 * 296.78583 * 17 16 15 28 28 H 1.08997 * 109.48111 * 182.40965 * 18 17 16 29 29 H 1.09000 * 109.48212 * 62.37239 * 18 17 16 30 30 H 1.09000 * 109.47932 * 58.81878 * 20 19 18 31 31 H 1.08993 * 109.48024 * 178.86013 * 20 19 18 32 32 H 1.08996 * 109.52270 * 297.70307 * 21 20 19 33 33 H 1.08995 * 109.57012 * 177.54155 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4274 -3.8748 -0.0014 11 6 1.3074 -5.2350 -0.0021 12 7 -0.0062 -5.1658 -0.0060 13 7 -0.5186 -6.3434 0.0007 14 7 0.4109 -7.2365 0.0034 15 7 1.6368 -6.5484 -0.0027 16 6 2.9823 -7.1279 -0.0033 17 6 3.1702 -7.9881 1.2501 18 6 4.5488 -8.6521 1.2019 19 8 4.6598 -9.4302 0.0083 20 6 4.5396 -8.6710 -1.1964 21 6 3.1606 -8.0078 -1.2445 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6242 -2.5574 0.8881 25 1 3.7235 -6.3288 -0.0116 26 1 2.3971 -8.7558 1.2844 27 1 3.0993 -7.3600 2.1381 28 1 4.6712 -9.2993 2.0703 29 1 5.3225 -7.8843 1.2085 30 1 5.3132 -7.9035 -1.2210 31 1 4.6553 -9.3317 -2.0554 32 1 2.3874 -8.7758 -1.2606 33 1 3.0822 -7.3930 -2.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330658928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:37 Heat of formation + Delta-G solvation = 35.451689 kcal Electronic energy + Delta-G solvation = -18224.479200 eV Core-core repulsion = 15219.954865 eV Total energy + Delta-G solvation = -3004.524335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.01712 -40.44988 -36.78893 -35.33417 -33.39388 -32.95521 -32.26617 -30.78569 -27.13453 -25.45847 -24.73586 -24.49120 -24.04991 -21.33896 -19.52668 -18.48943 -18.04573 -17.74183 -16.96182 -16.86270 -16.71128 -15.87755 -15.54517 -15.16697 -15.04302 -14.58120 -14.54702 -14.15946 -13.84564 -13.53532 -12.82174 -12.80100 -12.77440 -12.66741 -12.48866 -12.42764 -12.17963 -12.01516 -11.63421 -11.51318 -11.36578 -11.33698 -10.75796 -10.74105 -8.94046 -8.32734 -6.50973 -0.26609 -0.20215 0.98493 1.04054 1.27683 1.45455 1.46266 1.60307 2.37643 2.87118 2.96377 3.03088 3.38098 3.53704 3.65149 3.78866 3.99419 4.08278 4.16373 4.20030 4.45266 4.52872 4.58291 4.74838 4.85733 4.88820 4.90068 4.97327 4.99797 5.14460 5.51738 5.76630 6.15746 6.58499 7.19693 7.25693 8.79269 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.004553 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.965927 B = 6147.802932 C = 6807.167850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.981 3.019 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.066 3.934 10 S 0.049 5.951 11 C 0.214 3.786 12 N -0.367 5.367 13 N -0.063 5.063 14 N -0.091 5.091 15 N -0.352 5.352 16 C 0.139 3.861 17 C -0.160 4.160 18 C 0.069 3.931 19 O -0.394 6.394 20 C 0.069 3.931 21 C -0.160 4.160 22 H 0.271 0.729 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.130 0.870 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.735 -14.746 -0.008 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.099 0.901 9 C -0.082 4.082 10 S 0.275 5.725 11 C -0.170 4.170 12 N -0.224 5.224 13 N -0.059 5.059 14 N -0.079 5.079 15 N -0.153 5.153 16 C 0.039 3.961 17 C -0.199 4.199 18 C -0.008 4.008 19 O -0.313 6.313 20 C -0.008 4.008 21 C -0.199 4.199 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.481 -15.445 -0.008 20.501 hybrid contribution -1.140 1.359 -0.002 1.774 sum 12.341 -14.086 -0.010 18.728 Atomic orbital electron populations 1.70117 1.08085 1.28752 1.48937 1.25958 0.95733 1.03256 0.93427 0.85162 0.79159 0.77392 0.77928 1.17737 1.20226 1.20216 1.20960 0.93922 0.89069 1.54397 0.90104 1.21139 0.94795 0.92095 1.00198 1.85073 1.07006 0.90987 1.89417 1.28391 0.96921 0.92232 0.99456 1.75011 1.05337 1.16630 1.25450 1.77821 1.22930 0.94210 1.10908 1.82164 0.85654 1.17819 1.22248 1.52018 1.09159 1.02496 1.51616 1.22238 0.76166 0.98260 0.99460 1.22620 1.01574 0.99662 0.96064 1.22712 0.93165 0.96322 0.88579 1.87962 1.92916 1.36018 1.14400 1.22712 0.93141 0.96664 0.88259 1.22614 1.01592 0.99467 0.96199 0.91977 0.95455 0.95469 0.85235 0.90704 0.89566 0.86128 0.90301 0.90302 0.86121 0.90692 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.84 16 2 C 0.02 0.98 5.46 84.65 0.46 1.45 16 3 Si 0.98 40.70 29.54 68.60 2.03 42.73 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -28.32 9.13 25.60 0.23 -28.08 16 8 H 0.08 3.92 7.71 -2.91 -0.02 3.90 16 9 C 0.07 3.34 4.99 71.24 0.36 3.70 16 10 S 0.05 1.84 21.36 -56.49 -1.21 0.63 16 11 C 0.21 8.31 8.15 179.84 1.47 9.77 16 12 N -0.37 -16.71 11.57 -57.41 -0.66 -17.37 16 13 N -0.06 -2.70 13.38 37.02 0.50 -2.20 16 14 N -0.09 -3.36 13.85 37.02 0.51 -2.84 16 15 N -0.35 -11.36 3.34 -326.73 -1.09 -12.45 16 16 C 0.14 3.06 3.11 45.11 0.14 3.20 16 17 C -0.16 -2.95 5.72 30.68 0.18 -2.77 16 18 C 0.07 0.90 6.84 72.01 0.49 1.39 16 19 O -0.39 -6.41 10.77 -148.98 -1.60 -8.01 16 20 C 0.07 0.90 6.84 72.01 0.49 1.39 16 21 C -0.16 -2.94 5.71 30.69 0.18 -2.76 16 22 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.03 1.52 8.14 -2.40 -0.02 1.50 16 24 H 0.03 1.51 8.14 -2.40 -0.02 1.49 16 25 H 0.13 2.48 7.33 -2.39 -0.02 2.46 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.97 299.12 3.86 -62.10 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.12 Total: 2.98 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.99 Total: -12.73 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -0.46 Total: -87.70 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.60 Total: -8.01 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.21 Total: 0.63 kcal Total: -65.97 3.86 -62.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330658928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.555 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds