Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47493 * 2 1 4 4 C 1.50701 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.27742 * 124.89325 * 89.96972 * 4 3 2 6 6 N 1.37793 * 116.43917 * 180.02562 * 5 4 3 7 7 H 0.97001 * 122.86507 * 180.27472 * 6 5 4 8 8 C 1.34682 * 114.27485 * 0.02562 * 6 5 4 9 9 N 1.32858 * 125.76221 * 180.02562 * 8 6 5 10 10 C 1.34260 * 119.99999 * 353.41956 * 9 8 6 11 11 O 1.35368 * 119.99977 * 184.59129 * 10 9 8 12 12 N 1.31044 * 120.00041 * 4.59154 * 10 9 8 13 13 C 1.46503 * 119.99997 * 184.63656 * 12 10 9 14 14 C 1.50702 * 109.47125 * 114.46298 * 13 12 10 15 15 H 1.08001 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99777 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00437 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99652 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47472 * 59.99469 * 18 16 14 20 20 H 1.48498 * 109.46808 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46889 * 299.99451 * 18 16 14 22 22 S 1.75907 * 124.89605 * 270.00397 * 4 3 2 23 23 H 1.09001 * 109.47799 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47138 * 300.00431 * 1 2 3 25 25 H 1.09006 * 109.46933 * 59.99729 * 1 2 3 26 26 H 1.08999 * 109.47436 * 239.99357 * 2 1 3 27 27 H 1.09000 * 109.47000 * 119.99817 * 2 1 3 28 28 H 1.09002 * 109.46849 * 59.99874 * 3 2 1 29 29 H 1.09000 * 109.46848 * 299.99910 * 3 2 1 30 30 H 0.96696 * 114.00030 * 175.19269 * 11 10 9 31 31 H 1.09005 * 109.47209 * 234.45964 * 13 12 10 32 32 H 1.08996 * 109.47091 * 354.45678 * 13 12 10 33 33 H 0.96997 * 120.00295 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2782 1.4417 -1.0468 6 7 5.6411 1.4413 -0.8437 7 1 6.2819 1.4447 -1.5719 8 6 6.0077 1.4412 0.4523 9 7 7.2565 1.4413 0.9059 10 6 8.2818 1.3083 0.0495 11 8 9.5481 1.2149 0.5190 12 7 8.0569 1.2688 -1.2409 13 6 9.1624 1.0221 -2.1700 14 6 8.9493 -0.2980 -2.8650 15 1 8.0778 -0.8938 -2.6371 16 6 9.8676 -0.7456 -3.7910 17 7 10.9291 -0.0204 -4.0682 18 14 9.6038 -2.3823 -4.6520 19 1 8.3242 -2.3452 -5.4045 20 1 10.7243 -2.6323 -5.5939 21 1 9.5530 -3.4701 -3.6424 22 16 4.5528 1.4426 1.4438 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 10.2102 1.0485 -0.1658 31 1 9.1996 1.8209 -2.9108 32 1 10.1018 0.9946 -1.6178 33 1 11.5748 -0.3351 -4.7199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331139214.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = 56.138473 kcal Electronic energy + Delta-G solvation = -17839.172341 eV Core-core repulsion = 14835.545052 eV Total energy + Delta-G solvation = -3003.627289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22061 -38.56991 -36.19487 -34.69789 -33.58966 -31.73011 -31.05874 -27.71824 -27.18535 -25.05860 -22.95830 -22.13870 -21.09440 -20.03633 -18.80927 -17.55844 -16.57782 -16.22751 -15.62359 -15.50386 -15.08528 -14.64588 -14.43908 -14.21217 -13.54252 -13.38383 -12.68177 -12.43843 -12.36609 -12.14284 -11.84079 -11.76438 -11.20941 -11.16864 -11.06553 -10.89341 -10.62960 -10.34832 -9.89543 -9.68857 -9.53314 -9.03726 -8.78724 -8.48984 -7.37190 -6.19131 -4.25558 0.62733 0.99298 1.31108 1.76722 2.74608 3.24168 3.27989 3.31221 3.69239 3.97770 4.32434 4.34561 4.62359 4.67336 4.90094 5.13745 5.20487 5.29304 5.38838 5.45779 5.57047 5.76979 5.85726 5.98620 5.99939 6.85110 7.15434 7.34690 7.40030 7.73800 7.78178 8.03878 8.13906 8.77310 9.04595 9.41678 10.88771 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.004798 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.632023 B = 5833.858849 C = 6953.578931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.033 4.033 4 C 0.044 3.956 5 N -0.227 5.227 6 N -0.487 5.487 7 H 0.464 0.536 8 C 0.361 3.639 9 N -0.521 5.521 10 C 0.507 3.493 11 O -0.510 6.510 12 N -0.644 5.644 13 C 0.192 3.808 14 C -0.517 4.517 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 S 0.121 5.879 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.413 0.587 31 H 0.046 0.954 32 H -0.003 1.003 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.001 2.660 9.590 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.075 4.075 4 C -0.257 4.257 5 N -0.042 5.042 6 N -0.239 5.239 7 H 0.334 0.666 8 C -0.023 4.023 9 N -0.265 5.265 10 C 0.189 3.811 11 O -0.310 6.310 12 N -0.394 5.394 13 C 0.065 3.935 14 C -0.556 4.556 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.201 1.201 22 S 0.354 5.646 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.274 0.726 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.230 2.894 10.376 22.041 hybrid contribution 1.964 -1.091 -2.410 3.295 sum -17.266 1.803 7.966 19.100 Atomic orbital electron populations 1.21754 0.94797 1.02194 1.02087 1.21574 0.96346 0.94831 1.03504 1.20315 0.82790 0.99362 1.05016 1.27948 1.01660 1.05143 0.90983 1.73524 0.91532 1.13661 1.25480 1.49155 1.02107 1.64163 1.08469 0.66567 1.25304 0.97802 0.93242 0.85945 1.68913 0.92995 1.34292 1.30320 1.20964 0.83597 0.90680 0.85862 1.84550 1.15640 1.87930 1.42852 1.71705 1.37766 1.28380 1.01580 1.19522 0.85899 0.97890 0.90213 1.21062 1.08174 1.03382 1.22966 0.92182 1.25009 0.94880 0.97878 0.96490 1.69922 1.11392 1.38042 1.33858 0.86458 0.77862 0.83251 0.79322 1.20005 1.21007 1.20131 1.85586 0.91173 1.81978 1.05864 0.92274 0.92428 0.92369 0.90959 0.91141 0.88675 0.88226 0.72577 0.93653 0.98570 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.15 0.37 -0.41 16 2 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 3 C -0.03 -0.24 5.82 -27.88 -0.16 -0.40 16 4 C 0.04 0.50 6.85 -13.98 -0.10 0.41 16 5 N -0.23 -3.44 11.97 33.11 0.40 -3.04 16 6 N -0.49 -8.93 6.59 30.56 0.20 -8.73 16 7 H 0.46 9.71 5.61 -184.33 -1.03 8.68 16 8 C 0.36 6.48 8.23 -88.70 -0.73 5.75 16 9 N -0.52 -10.80 10.62 -14.64 -0.16 -10.96 16 10 C 0.51 11.54 8.74 -90.63 -0.79 10.75 16 11 O -0.51 -11.20 13.62 -17.80 -0.24 -11.44 16 12 N -0.64 -15.34 6.78 -64.24 -0.44 -15.77 16 13 C 0.19 5.08 6.06 -5.19 -0.03 5.05 16 14 C -0.52 -14.75 9.39 -34.44 -0.32 -15.08 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 S 0.12 1.49 23.36 -107.50 -2.51 -1.02 16 23 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 8.54 5.88 45.56 0.27 8.81 16 31 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.00 -0.08 5.27 -51.93 -0.27 -0.35 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -32.13 301.48 -8.48 -40.61 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.97 Total: 7.77 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -2.02 Total: 6.66 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.74 Total: -63.78 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.24 Total: -11.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.51 Total: -1.02 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.13 -8.48 -40.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331139214.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.746 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds